G1740744 (nlgn2)


Basic Information

Item Value
gene id G1740744
gene name nlgn2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44196984 ~ 44197566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993545
tgaGTGAAGTCAATGCAGTGCtcacaggcactacacaaaaacaagatcccacaacaaacAGCTGGGAAAAGGCtgcttaaatatgatccccaatcagagacaacgatagacagctgcctctgattgggaaccataccaggccaacatagaaataaagaaactagaatgcccaccctagtcacaccccgacctaacccaaaatagagaataaaggatctttaaggtcagggcgtgacactaatgGTACCTTGGGAACTCACTTTCAACCAACCTATCCTTTTAAGTAACCACACAGTTCATTGAATGATCCTTATTCTACCAGGCAAGGGTTAAGTAGACTGagaagtaaatcaaatcaaatcaagtaaGAATGTGACCCACCAGTGTGCCCCTTACCCTCGGAGTGGTGCGAGAGGATGAGCAGGTTGACGCAGGACGCCCCCGCCCCGGAGCCGAAGATGGTGATGCGCTCGGGGTCGCCCCCAAAATGGCCAATGTTCTCATTGAGCCAACGCAGGGCCTGGATCTGGTCCAACAGACCGTAGTTCCCCTTGGCTGACTGGTCGCCTGTACTCAGGAAgcc

Function

symbol description
nlgn2 Predicted to enable cell adhesion molecule binding activity; neurexin family protein binding activity; and signaling receptor activity. Involved in positive regulation of insulin secretion. Acts upstream of or within positive regulation of protein localization to synapse. Predicted to be located in inhibitory synapse. Predicted to be integral component of postsynaptic membrane. Predicted to be active in GABA-ergic synapse; cell surface; and glycinergic synapse. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
PREDICTED: neuroligin-2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993545 True 583 lncRNA 0.50 1 44196984 44197566

Neighbor

gene id symbol gene type direction distance location
LOC110500520 LOC106608811 coding upstream 42915 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding upstream 68931 44126674 ~ 44128053 (+)
pop7 pop7 coding upstream 97058 44097937 ~ 44099926 (+)
LOC110500517 LOC106608821 coding upstream 147396 44039952 ~ 44050765 (+)
LOC118942933 NA coding upstream 177083 44012853 ~ 44019901 (+)
LOC110500528 tmem256 coding downstream 248620 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 coding downstream 263772 44461338 ~ 44480565 (+)
LOC110500530 NA coding downstream 340378 44537944 ~ 44556711 (+)
LOC110500854 LOC106608721 coding downstream 403297 44600863 ~ 44667561 (+)
chrnb1 LOC106608722 coding downstream 482099 44679665 ~ 44703721 (+)
G1740743 NA non-coding upstream 83 44196414 ~ 44196901 (+)
G1740742 NA non-coding upstream 3260 44193392 ~ 44193724 (+)
G1740741 NA non-coding upstream 4718 44191916 ~ 44192266 (+)
G1740740 LOC106577771 non-coding upstream 5278 44191447 ~ 44191706 (+)
G1740739 LOC106533889 non-coding upstream 6663 44189979 ~ 44190321 (+)
G1740750 NA non-coding downstream 10078 44207644 ~ 44207944 (+)
G1740844 NA non-coding downstream 189126 44386692 ~ 44386905 (+)
G1740847 NA non-coding downstream 191606 44389172 ~ 44390435 (+)
G1741581 NA non-coding downstream 203793 44401359 ~ 44401596 (+)
G1741587 NA non-coding downstream 207660 44405226 ~ 44405428 (+)
G1740453 NA other upstream 670258 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 726659 43469818 ~ 43470325 (+)
G1740398 NA other upstream 745817 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 806685 43389189 ~ 43390299 (+)
LOC110500499 ubil other upstream 928841 43267057 ~ 43268143 (+)
G1740752 NA other downstream 15220 44212786 ~ 44213230 (+)
fcer1g LOC106608748 other downstream 1246961 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 1287706 45485247 ~ 45517233 (+)

Expression


Co-expression Network