XLOC_003675 (camta1)


Basic Information

Item Value
gene id XLOC_003675
gene name camta1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41110669 ~ 41157954 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007137
GCCGTCGTCTACTTCAACACCACAATAAACAGaTGAACATGGACATTTGAAAATCTACTTGCCCAAGAAGCTTCTGGAATGCCTTCCCAAATGCTCCTCCCTGCCCAAGGAGAGACATCGCTGGAACACCAACGAGGTAAGA
>TCONS_00007138
CCTCCCGCCTCTCGCCCCCTCCACAGCCGCGTCCTCGCCGTGAACGCGCGTGGTACCCCCCCGGTCGctaggaggaggaggaggaggaggaggatgtggCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGgcatggtgtgggagtgtctatttgggcacgctgactttcagagtttttaatcttgttttgaacgttgaaaaTGAACATGGACATTTGAAAATCTACTTGCCCAAGAAGCTTCTGGAATGCCTTCCCAAATGCTCCTCCCTGCCCAAGGAGAGACATCGCTGGAACACCAACGAGGTAAGAAGCTTtgattagactttttttttcat
>TCONS_00007139
CCTCCACACCGCATCCACGCTCCCCGTGGGCTGACAAACAAGCGAGCTCCGTGAAGTCAAACGCGGTCAACTACTTCATTTTTTTCGCTCTCTCTCGCATTGAACAGGGCGACGCTTTTAACTCCAAAAGCGATAAATGCAGATTTATGGTGATGCTCTAAAACGTGATTGATTTCTTTCCACCCCCACCAGAACCCCCCTTATAGTGACTGAACCCACCGACAGCTGCTCGATATGCTTCAGTCTCGTGTGGAATATTTTCCCAGGACTGTGACTGTTTGGCCGCCGCTGTTTTGAAGCTGTCAGCAGTTATTTTCTTAGATAATAACGCATTTAAACTGGATTGGAAAGGACACCCGGAAAATTGAAGCGGAATTTTAATGAGGCAGCAAAATGAAAGaTGAACATGGACATTTGAAAATCTACTTGCCCAAGAAGCTTCTGGAATGCCTTCCCAAATGCTCCTCCCTGCCCAAGGAGAGACATCGCTGGAACACCAACGAGGTAA

Function

symbol description
camta1 Predicted to enable double-stranded DNA binding activity; sequence-specific DNA binding activity; and transcription coregulator activity. Involved in positive regulation of calcineurin-NFAT signaling cascade and positive regulation of protein dephosphorylation. Located in cytosol and nucleolus. Implicated in nonprogressive cerebellar ataxia with mental retardation.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007137 False 142 processed_transcript 0.48 2 41110669 41157928
TCONS_00007138 False 344 mRNA 0.54 4 41135055 41157954
TCONS_00007139 True 508 processed_transcript 0.47 2 41135609 41157926

Neighbor

gene id symbol gene type direction distance location
XLOC_003674 phf13 coding upstream 5037 41089574 ~ 41105632 (+)
XLOC_003673 svbp coding upstream 42880 41064822 ~ 41067789 (+)
XLOC_003671 NA coding upstream 154546 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 coding upstream 210780 40897326 ~ 40899889 (+)
XLOC_003670 CABZ01044767.1 coding upstream 221375 40889180 ~ 40889294 (+)
XLOC_003676 CABZ01087025.2 coding downstream 34375 41192329 ~ 41201272 (+)
XLOC_003677 CABZ01087025.1 coding downstream 65531 41223485 ~ 41235090 (+)
XLOC_003678 pax7a coding downstream 84690 41242644 ~ 41372948 (+)
XLOC_003679 park7 coding downstream 301454 41459408 ~ 41475995 (+)
XLOC_003680 BX571706.1 coding downstream 307153 41465107 ~ 41465236 (+)
XLOC_003369 CR854846.2 misc upstream 24987587 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 28398673 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 28416406 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 28425070 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 28430641 12679732 ~ 12680028 (+)
XLOC_003669 NA non-coding upstream 245127 40864955 ~ 40865542 (+)
XLOC_003662 NA non-coding upstream 676589 40220055 ~ 40434080 (+)
XLOC_003684 NA non-coding downstream 775146 41933100 ~ 41934619 (+)
XLOC_003687 NA non-coding downstream 856049 42014003 ~ 42018127 (+)

Expression


Co-expression Network