G1741712


Basic Information

Item Value
gene id G1741712
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44674007 ~ 44675297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1994619
GGGGAGCTGCCCAGAGGTACTGtataccagacctgggttcaaatactatttgaaatcatttcaaatactttatcatggcttgattgagcttgcccggcataatggaaccaatagaatactGGCATGAGTGCAAACCCTTCCCATTGGGCAGTTCATGAAGACTAGggcaaacaaacactcaaactgttTGAAAGATTTAGAATAGAATTTGAGCCCAGGCCTACTATAGTATGACGGTACACAGTGGCTTCGCATAGTGATTGTACGTTGACTATGCTAAAGGGAAGATGTACTACTGTTTTAAAAAGTGGGATCTTGTTGGTGAAGACAGCGATTGATTGATTGTCATCGGTGGGGGTATTGTTGTTAGGGATATTGTGATATTGTGACTGTTGTACAAAATGTTATTTTTAGTGACTGTATGTCTCTATTCAACCTGTTTATTTTCTAATCAGACTCTGACGTGCGCCACCCACCCAACATTGAACATCAACCCGACAATGCAAACTAAAAGACAAACAGAAAAGTAAAATATTAGTGAGTGACAGAGTGCAGAGGAAGGATATTCACCTTTTGGCTACAATCAAACTGGATGACCTCTGAACCTTGAAAGGAATCTAACTAGCTCTCCAGCAGCATGTACACTGCTcgctcaccgtctctctctctctctctcacacacacacacacaccacacacacaccacacagtatAACCCACTTGTGTGATTTTGCGATCAATCAAAGTGGTCTGCTTTGTACATTGGAGCCCCTAGAGTTTTGTATTGCATGGATGATCCAAGTTAttgtgatgatgataataatgaagTCTTCCAAAAAAAGGATTTTAAGAAAATCTCCATAGAACTTTTTTTCTCGTCTTCCAAAGCAAAAACAGTGCATCAGTCTTCCAGCTAACTAAAAAGCCACAATGACACTATTTTTGTAACAAAACAATGAGACTATAATAAACATGGACGACAGGAAAAAAGAAGGGAATGGGAGGTGGGACAATAAAGTTCTATCTATCCAAGGTTGATTTGAGCACTATAGCctacagcagcagagagggtCACAGACAGACCGTACTACAAGCATGCATGCGTCCAACATTTACTGGAAACATCAAAAAAGAAAGTCAAGGAGTCCTCTATTTACTCTCCCCTTCCCCCATAAACACTCTTCCTCCTTGAACCCTTGTCTTCtctgcatttgcaatatgatctGTATTAATTTCTATAATAACTTACACAATGTCAAGGGAGGCA
>TU1994620
GGGGAGCTGCCCAGAGGTACTGtataccagacctgggttcaaatactatttgaaatcatttcaaatactttatcatggcttgattgagcttgcccggcataatggaaccaatagaatactGGCATGAGTGCAAACCCTTCCCATTGGGCAGTTCATGAAGACTAGggcaaacaaacactcaaactgttTGAAAGATTTAGAATAGAATTTGAGCCCAGGCCTACTATAGTATGACGGTACACAGTGGCTTCGCATAGTGATTGTACGTTGACTATGCTAAAGGGAAGATGTACTACTGTTTTAAAAAGTGGGATCTTGTTGGTGAAGACAGCGATTGATTGATTGTCATCGGTGGGGGTATTGTTGTTAGGGATATTGTGATATTGTGACTGTTGTACAAAATGTTATTTTTAGTGACTGTATGTCTCTATTCAACCTGTTTATTTTCTAATCAGACTCTGACGTGCGCCACCCACCCAACATTGAACATCAACCCGACAATGCAAACTAAAAGACAAACAGAAAAGTAAAATATTAGTGAGTGACAGAGTGCAGAGGAAGGATATTCACCTTTTGGCTACAATCAAACTGGATGACCTCTGAACCTTGAAAGGAATCTAACTAGCTCTCCAGCAGCATGTACACTGCTcgctcaccgtctctctctctctcacacacacacacacacaccacacacacacacaccacacagtatAACCCACTTGTGTGATTTTGCGATCAATCAAAGTGGTCTGCTTTGTACATTGGAGCCCCTAGAGTTTTGTATTGCATGGATGATCCAAGTTAttgtgatgatgataataatgaagTCTTCCAAAAAAAGGATTTTAAGAAAATCTCCATAGAACTTTTTTTCTCGTCTTCCAAAGCAAAAACAGTGCATCAGTCTTCCAGCTAACTAAAAAGCCACAATGACACTATTTTTGTAACAAAACAATGAGACTATAATAAACATGGACGACAGGAAAAAAGAAGGGAATGGGAGGTGGGACAATAAAGTTCTATCTATCCAAGGTTGATTTGAGCACTATAGCctacagcagcagagagggtCACAGACAGACCGTACTACAAGCATGCATGCGTCCAACATTTACTGGAAACATCAAAAAAGAAAGTCAAGGAGTCCTCTATTTACTCTCCCCTTCCCCCATAAACACTCTTCCTCCTTGAACCCTTGTCTTCtctgcatttgcaatatgatctGTATTAATTTCTATAATAACTTACACAATGTCAAGGGAGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1994619 False 1267 lncRNA 0.40 2 44674007 44675297
TU1994620 True 1269 lncRNA 0.40 2 44674007 44675297

Neighbor

gene id symbol gene type direction distance location
LOC110500854 LOC106608721 coding upstream 6446 44600863 ~ 44667561 (+)
LOC110500530 NA coding upstream 117296 44537944 ~ 44556711 (+)
LOC110500529 LOC106608720 coding upstream 193442 44461338 ~ 44480565 (+)
LOC110500528 tmem256 coding upstream 222475 44446186 ~ 44451532 (+)
LOC110500520 LOC106608811 coding upstream 519938 44126082 ~ 44154069 (+)
chrnb1 LOC106608722 coding downstream 4368 44679665 ~ 44703721 (+)
LOC110500532 LOC106608724 coding downstream 51903 44727200 ~ 44746630 (+)
LOC110500535 LOC106608728 coding downstream 106922 44782219 ~ 44788930 (+)
LOC118942934 NA coding downstream 115302 44789670 ~ 44796290 (+)
LOC110500538 LOC106608727 coding downstream 129501 44804798 ~ 44807754 (+)
G1741670 NA non-coding upstream 185249 44488530 ~ 44488758 (+)
G1741666 NA non-coding upstream 198378 44475403 ~ 44475629 (+)
G1741653 NA non-coding upstream 215114 44458606 ~ 44458893 (+)
G1741587 NA non-coding upstream 268579 44405226 ~ 44405428 (+)
G1741965 NA non-coding downstream 44242 44719539 ~ 44719756 (+)
G1741989 NA non-coding downstream 84182 44759479 ~ 44759698 (+)
G1741992 NA non-coding downstream 88040 44763337 ~ 44763631 (+)
G1741994 NA non-coding downstream 90391 44765688 ~ 44765905 (+)
G1740752 NA other upstream 460777 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1147281 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 1203682 43469818 ~ 43470325 (+)
fcer1g LOC106608748 other downstream 769230 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 809975 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 other downstream 873820 45544516 ~ 45565742 (+)
G1743043 NA other downstream 963999 45639296 ~ 45639742 (+)
G1743077 NA other downstream 1031845 45707142 ~ 45709950 (+)

Expression


Co-expression Network