G1742416


Basic Information

Item Value
gene id G1742416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45522127 ~ 45522440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1995372
agacagacagacagacagacagacagacagacagacagacagacagacagagacaaggttGCATGACGGCATAGGCCGAGGCACAGTTTGTCACGTTTACTCCATATGCTGATAATTGTCTCTCGTCCATCACTCACATATTCCTCCTCCAGATTGAGGAGGTGGTCGACGGCGTTGTCCACACTCTCTGGTAGTCCAGTCACTGTCACCCTGCCTGGGTCCTCTGAACCCGGCTGGGGAAACCGGATGTCCACCTAAacacacaggacagaggagagaaaccatGCCACGTCAGAGTGTGGCACAAACACGGC

Function

NR:

description
PREDICTED: vigilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1995372 True 314 lncRNA 0.54 1 45522127 45522440

Neighbor

gene id symbol gene type direction distance location
LOC110500870 LOC106608752 coding upstream 4894 45485247 ~ 45517233 (+)
nectin4a LOC106608750 coding upstream 47213 45455659 ~ 45474914 (+)
fcer1g LOC106608748 coding upstream 72415 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 77930 45432580 ~ 45444197 (+)
kirrel1a LOC106608745 coding upstream 102954 45379310 ~ 45419173 (+)
si:dkey-38p12.3 LOC106608755 coding downstream 22076 45544516 ~ 45565742 (+)
si:dkey-19b23.7 LOC106608757 coding downstream 120421 45642861 ~ 45648249 (+)
LOC110500572 LOC106608759 coding downstream 155221 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 166010 45688450 ~ 45702662 (+)
LOC110500577 lsmd1 coding downstream 222170 45744610 ~ 45755368 (+)
G1742379 NA non-coding upstream 439 45480475 ~ 45521688 (+)
G1742371 NA non-coding upstream 95180 45422297 ~ 45426947 (+)
il13ra1 i13r2 non-coding upstream 153915 45359504 ~ 45368212 (+)
G1742308 NA non-coding upstream 258513 45263230 ~ 45263614 (+)
G1742298 NA non-coding upstream 277951 45230536 ~ 45244176 (+)
G1742381 NA non-coding downstream 2937 45525377 ~ 45525723 (+)
G1742383 NA non-coding downstream 3912 45526352 ~ 45526612 (+)
G1742420 NA non-coding downstream 11521 45533961 ~ 45534179 (+)
G1742421 LOC106608754 non-coding downstream 12252 45534692 ~ 45534908 (+)
G1742422 LOC106608754 non-coding downstream 12672 45535112 ~ 45535449 (+)
LOC110500529 LOC106608720 other upstream 1049563 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 1070595 44446186 ~ 44451532 (+)
G1740752 NA other upstream 1308897 44212786 ~ 44213230 (+)
G1743043 NA other downstream 116856 45639296 ~ 45639742 (+)
G1743077 NA other downstream 184702 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1641464 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2572327 48094767 ~ 48095119 (+)

Expression


Co-expression Network