G1742421 (LOC106608754)


Basic Information

Item Value
gene id G1742421
gene name LOC106608754
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45534692 ~ 45534908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1995381
AGATCCTCTATGATCTCCTGGATTCTTCGTTTGGCTGCCTCCACACAGTCCTTGGCCCCCTTCAGTGTGATGCGGTCGCTGTGAGTCCCGGTGCGGGGGAAGCTGACCGCCACGCCGCCGTATTCCTCCGCCAGCTCCCTCAACACCTGGCCTCGCCGGCAGACAAAGTACCGGTGGTGCCGCGTCTCCACAACCATGCTGTCCTCCACCACGTCgt

Function

NR:

description
vigilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1995381 True 217 lncRNA 0.63 1 45534692 45534908

Neighbor

gene id symbol gene type direction distance location
LOC110500870 LOC106608752 coding upstream 17459 45485247 ~ 45517233 (+)
nectin4a LOC106608750 coding upstream 59778 45455659 ~ 45474914 (+)
fcer1g LOC106608748 coding upstream 84980 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 90495 45432580 ~ 45444197 (+)
kirrel1a LOC106608745 coding upstream 115519 45379310 ~ 45419173 (+)
si:dkey-38p12.3 LOC106608755 coding downstream 9608 45544516 ~ 45565742 (+)
si:dkey-19b23.7 LOC106608757 coding downstream 107953 45642861 ~ 45648249 (+)
LOC110500572 LOC106608759 coding downstream 142753 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 153542 45688450 ~ 45702662 (+)
LOC110500577 lsmd1 coding downstream 209702 45744610 ~ 45755368 (+)
G1742420 NA non-coding upstream 513 45533961 ~ 45534179 (+)
G1742383 NA non-coding upstream 8080 45526352 ~ 45526612 (+)
G1742381 NA non-coding upstream 8969 45525377 ~ 45525723 (+)
G1742416 NA non-coding upstream 12252 45522127 ~ 45522440 (+)
G1742379 NA non-coding upstream 13004 45480475 ~ 45521688 (+)
G1742422 LOC106608754 non-coding downstream 204 45535112 ~ 45535449 (+)
G1742423 LOC106608754 non-coding downstream 720 45535628 ~ 45535902 (+)
G1742424 NA non-coding downstream 1846 45536754 ~ 45536992 (+)
G1742425 NA non-coding downstream 2155 45537063 ~ 45537424 (+)
G1742426 NA non-coding downstream 3498 45538406 ~ 45538720 (+)
LOC110500529 LOC106608720 other upstream 1062128 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 1083160 44446186 ~ 44451532 (+)
G1740752 NA other upstream 1321462 44212786 ~ 44213230 (+)
G1743043 NA other downstream 104388 45639296 ~ 45639742 (+)
G1743077 NA other downstream 172234 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1628996 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2559859 48094767 ~ 48095119 (+)

Expression


Co-expression Network