Gene
RNA
| Item | Value |
|---|---|
| gene id | G1742427 |
| gene name | LOC106608754 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 45539166 ~ 45539573 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| vigilin-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1995387 | True | 408 | lncRNA | 0.55 | 1 | 45539166 | 45539573 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500870 | LOC106608752 | coding | upstream | 21933 | 45485247 ~ 45517233 (+) |
| nectin4a | LOC106608750 | coding | upstream | 64252 | 45455659 ~ 45474914 (+) |
| fcer1g | LOC106608748 | coding | upstream | 89454 | 45444361 ~ 45449712 (+) |
| ndufs2 | ndufs2 | coding | upstream | 94969 | 45432580 ~ 45444197 (+) |
| kirrel1a | LOC106608745 | coding | upstream | 119993 | 45379310 ~ 45419173 (+) |
| si:dkey-38p12.3 | LOC106608755 | coding | downstream | 4943 | 45544516 ~ 45565742 (+) |
| si:dkey-19b23.7 | LOC106608757 | coding | downstream | 103288 | 45642861 ~ 45648249 (+) |
| LOC110500572 | LOC106608759 | coding | downstream | 138088 | 45677661 ~ 45686049 (+) |
| LOC110500573 | LOC106608761 | coding | downstream | 148877 | 45688450 ~ 45702662 (+) |
| LOC110500577 | lsmd1 | coding | downstream | 205037 | 45744610 ~ 45755368 (+) |
| G1742426 | NA | non-coding | upstream | 446 | 45538406 ~ 45538720 (+) |
| G1742425 | NA | non-coding | upstream | 1742 | 45537063 ~ 45537424 (+) |
| G1742424 | NA | non-coding | upstream | 2174 | 45536754 ~ 45536992 (+) |
| G1742423 | LOC106608754 | non-coding | upstream | 3264 | 45535628 ~ 45535902 (+) |
| G1742422 | LOC106608754 | non-coding | upstream | 3717 | 45535112 ~ 45535449 (+) |
| G1742428 | NA | non-coding | downstream | 856 | 45540429 ~ 45540639 (+) |
| G1743002 | NA | non-coding | downstream | 39735 | 45579308 ~ 45606291 (+) |
| G1743003 | NA | non-coding | downstream | 40842 | 45580415 ~ 45606695 (+) |
| G1743004 | NA | non-coding | downstream | 41326 | 45580899 ~ 45626721 (+) |
| G1743007 | NA | non-coding | downstream | 42011 | 45581584 ~ 45627145 (+) |
| LOC110500529 | LOC106608720 | other | upstream | 1066602 | 44461338 ~ 44480565 (+) |
| LOC110500528 | tmem256 | other | upstream | 1087634 | 44446186 ~ 44451532 (+) |
| G1740752 | NA | other | upstream | 1325936 | 44212786 ~ 44213230 (+) |
| G1743043 | NA | other | downstream | 99723 | 45639296 ~ 45639742 (+) |
| G1743077 | NA | other | downstream | 167569 | 45707142 ~ 45709950 (+) |
| G1744645 | NA | other | downstream | 1624331 | 47163904 ~ 47236823 (+) |
| G1746210 | NA | other | downstream | 2555194 | 48094767 ~ 48095119 (+) |
