G1743094 (LOC107738011)


Basic Information

Item Value
gene id G1743094
gene name LOC107738011
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45723067 ~ 45723371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1996142
CCTTCCCCctttctcctatcctccctccctccatcccacatcAACAGGTGCCACAAAATGCTTGACAATAACTCACATTCAATCTCGTCCTTGAACAGCTCCTCGGTGCCAAACTTGAGGATGTCGTCCAGCTCCTGTTTGGACATGGATCCAGCCTTGGAGCCCAGGCCGGGCCGTACCACGAGGTGGGTCAACATCATCTTCCTCTTGGCCACCTGGGTGATGCGCTCCTCCACACTGGCACGGGTCACGAAGCGGTATATCATCACCTTGTTGGCCTGCCCGATGCGGTGGGCGCGACTGAA
>TU1996141
CGTCCTTGAACAGCTCCTCGGTGCCAAACTTGAGGATGTCGTCCAGCTCCTGTTTGGACATGGATCCAGCCTTGGAGCCCAGGCCGGGCCGTACCACGAGGTGGGTCAACATCATCTTCCTCTTGGCCACCTGGGTGATGCGCTCCTCCACACTGGCACGGGTCACGAAGCGGTATATCATCACCTTGTTGGCCTGCCCGATGCGGTGGGCGCGACTGAA

Function

NR:

description
hypothetical protein cypCar_00005456

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1996142 False 305 lncRNA 0.57 1 45723067 45723371
TU1996141 True 220 lncRNA 0.60 1 45723152 45723371

Neighbor

gene id symbol gene type direction distance location
LOC110500573 LOC106608761 coding upstream 20405 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 37018 45677661 ~ 45686049 (+)
si:dkey-19b23.7 LOC106608757 coding upstream 74818 45642861 ~ 45648249 (+)
si:dkey-38p12.3 LOC106608755 coding upstream 157325 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 205834 45485247 ~ 45517233 (+)
LOC110500577 lsmd1 coding downstream 21239 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 124815 45848186 ~ 45850007 (+)
LOC110500584 LOC106608769 coding downstream 146516 45869887 ~ 45888657 (+)
LOC110500588 LOC106608772 coding downstream 218786 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 293051 46016422 ~ 46020567 (+)
G1743095 NA non-coding upstream 861 45721996 ~ 45722206 (+)
G1743093 NA non-coding upstream 2224 45720512 ~ 45720843 (+)
G1743092 NA non-coding upstream 2631 45719746 ~ 45720436 (+)
G1743091 LOC106608762 non-coding upstream 4325 45718387 ~ 45718742 (+)
G1743090 NA non-coding upstream 4881 45717973 ~ 45718186 (+)
G1743096 NA non-coding downstream 1301 45724672 ~ 45725037 (+)
G1743098 LOC106608762 non-coding downstream 4105 45727476 ~ 45727961 (+)
G1743099 chd3 non-coding downstream 5129 45728500 ~ 45728760 (+)
G1743100 NA non-coding downstream 5519 45728890 ~ 45729205 (+)
G1743112 NA non-coding downstream 62479 45785850 ~ 45793826 (+)
G1743077 NA other upstream 13117 45707142 ~ 45709950 (+)
G1743043 NA other upstream 83325 45639296 ~ 45639742 (+)
fcer1g LOC106608748 other upstream 274380 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1440533 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2371396 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2601729 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3253955 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3722468 49445839 ~ 49446626 (+)

Expression


Co-expression Network