G1743099 (chd3)


Basic Information

Item Value
gene id G1743099
gene name chd3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45728500 ~ 45728760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1996147
CAGCGCGGACACAGCCACTCTCCGTTGGGGATCTCAGGCAGGGGCGGGTTGAGACAGTGGATGTGGTAGGAGGAGGGACAGGTGTCGCAGCATAATAGTTCCCCCCCATCCTTACAGACCCTGCAGAACTCCATGtgctcatcctcctcttcctccagtccTACCAGCAGTCCAACCCCAGGTACTTCTGGTACCACCAtgtcctcactctcctcctcaaACTCCTCAAAGTCCTCATCCTTCGCTTCCCACTGGATCCCC

Function

symbol description
chd3 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within central nervous system development and developmental growth. Is expressed in blastomere and central nervous system. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1996147 True 261 lncRNA 0.58 1 45728500 45728760

Neighbor

gene id symbol gene type direction distance location
LOC110500573 LOC106608761 coding upstream 25838 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 42451 45677661 ~ 45686049 (+)
si:dkey-19b23.7 LOC106608757 coding upstream 80251 45642861 ~ 45648249 (+)
si:dkey-38p12.3 LOC106608755 coding upstream 162758 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 211267 45485247 ~ 45517233 (+)
LOC110500577 lsmd1 coding downstream 15850 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 119426 45848186 ~ 45850007 (+)
LOC110500584 LOC106608769 coding downstream 141127 45869887 ~ 45888657 (+)
LOC110500588 LOC106608772 coding downstream 213397 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 287662 46016422 ~ 46020567 (+)
G1743098 LOC106608762 non-coding upstream 539 45727476 ~ 45727961 (+)
G1743096 NA non-coding upstream 3463 45724672 ~ 45725037 (+)
G1743094 LOC107738011 non-coding upstream 5129 45723067 ~ 45723371 (+)
G1743095 NA non-coding upstream 6294 45721996 ~ 45722206 (+)
G1743093 NA non-coding upstream 7657 45720512 ~ 45720843 (+)
G1743100 NA non-coding downstream 130 45728890 ~ 45729205 (+)
G1743112 NA non-coding downstream 57090 45785850 ~ 45793826 (+)
G1743166 NA non-coding downstream 163137 45891897 ~ 45928329 (+)
G1743171 NA non-coding downstream 193746 45922506 ~ 45967783 (+)
G1743202 NA non-coding downstream 200066 45928826 ~ 45930122 (+)
G1743077 NA other upstream 18550 45707142 ~ 45709950 (+)
G1743043 NA other upstream 88758 45639296 ~ 45639742 (+)
fcer1g LOC106608748 other upstream 279813 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1435144 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2366007 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2596340 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3248566 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3717079 49445839 ~ 49446626 (+)

Expression


Co-expression Network