G1743202


Basic Information

Item Value
gene id G1743202
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45928826 ~ 45930122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1996261
gtttatttgaacagtgagagacagaataacgacaaagaaatccagaaaaacgcatgtcaaattttttttaaattgatttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGgtagctaggtaagACAAGCACATATCATtaatcttaaggtagctaggtaagacaaccacatatcattaatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCA
>TU1996265
gtttatttgaacagtgagagacagaataacgacaaagaaatccagaaaaacgcatgtcaaattttttttaaattgatttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGGTAGCTAGGTAAGGCAAGCACAtatcattcatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCA
>TU1996274
gtttatttgaacagtgagagacagaataacgacaaagaaatccagaaaaacgcatgtcaaattttttttaaattgatttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGGTAGCTAGGTAAGGCAAGCACAtatcattcatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCAGGTCGAACCCTGAGAGGGgtaagaaagaaggagagatggatagaaaaTGAAAGCAGAGGACAAGAACATGTCAAGAGGACAGAGTTAAAAGGAGGATACggatagaggtggagagaagaaTAGGGCATATAGAATGGTTCAGAGGACGAAGGAGAGAGATACGGTTGTAGTTAATTTCATATTTAGCGTTATATTTAAAGGGGAATCAACACTAAGAACAACAACATTTCCAAGCACACCAATGATATTTCTTAACACCTCAAACGT
>TU1996276
gtttatttgaacagtgagagacagaataacgacaaagaaatccagaaaaacgcatgtcaaattttttttaaattgatttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGGTAGCTAGGTAAGGCAAGCACAtatcattcatcttaaggtagctaggtaagacaaccacatatcattaatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCA
>TU1996263
ttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGgtagctaggtaagACAAGCACATATCATtaatcttaaggtagctaggtaagacaaccacatatcattaatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCA
>TU1996268
ttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGgtagctaggtaagACAAGCACATATCATtaatcttaaggtagctaggtaagacaaccacatatcattaatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCAGGTCGAACCCTGAGAGGGgtaagaaagaaggagagatggatagaaaaTGAAAGCAGAGGACAAGAACATGTCAAGAGGACAGAGTTAAAAGGAGGATACggatagaggtggagagaagaaTAGGGCATATAGAATGGTTCAGAGGACGAAGGAGAGAGATACGGTTGTAGTTAATTTCATATTTAGCGTTATATTTAAAGGGGAATCAACACTAAGAACAACAACATTTCCAAGCACACCAATGATATTTCTTAACACCTCAAACGT
>TU1996272
ttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGGTAGCTAGGTAAGGCAAGCACAtatcattcatcttaaggtagctaggtaagacaaccacatatcattaatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCA
>TU1996275
ttgcattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtattttatacaggtaacaagctgagattaggagcacactcttaaagggattGAAACATAAGAACACTCAACTGAAATGTGGTTGGCATTTGAATCACGGGTTACACATTTAGTCATTTGGCAGGCACACTTTTCCAGAGCATTAATATTAAGGTAGCTAGGTAAGGCAAGCACAtatcattcatcttaaggtagctaggtaagacaaccacacatcacagtcatTTTAAGCAAACCTTTCCTTGATGGAGGAGCTTTCAGCAAAGTCAGGACTAAGAAGAAAAGACAAGTGCACAAGAAGGGCAAGTACATGGTAAGCTGTTGAAAATGTTTTAAGCCTGACATGAACATTCAATGGttattaagacattaatgatGGTATAGCATTTCTCTCCTAAAGACACATCTGAAGTATACAGTACATTCAACACACAGTATGGTTGCTATAGATTGGAGTGGTATTATATGCATGGCCCTCATTCATGGACGTCACTGTTCAGCCATGATAGCAAGATTATGGAAGTGTGTTCTTTTTCAAACAATAAAATGCAAACAGTACGCCCCCATGTTAACCGTCACGCAAGATAAGGAACAAAAAGTTAAAGCACTTGCTCAACATTTCTGGTGAAATTGCACTTCTTGCTTGGCCATCTAGTTTACCACTCTCTTCTCTGGGTCCTAAGCCACGTGAAGCTGTTGGGTGACCATGTGAACCTGCTGGATGCCTGATGTGGTCCGTGTCTTAACCTCACGAGCCATCTGGCACCAGGCACAAGCGTAGCAGCAACACACCAACCCGACGTCCACGCA

Function

NR:

description
cornifelin homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1996261 False 992 lncRNA 0.40 2 45928826 45929855
TU1996265 False 954 lncRNA 0.41 2 45928826 45929855
TU1996274 False 1221 lncRNA 0.41 2 45928826 45930122
TU1996276 False 992 lncRNA 0.41 2 45928826 45929855
TU1996263 False 915 lncRNA 0.41 2 45928903 45929855
TU1996268 False 1182 lncRNA 0.41 2 45928903 45930122
TU1996272 False 915 lncRNA 0.42 2 45928903 45929855
TU1996275 True 877 lncRNA 0.42 2 45928903 45929855

Neighbor

gene id symbol gene type direction distance location
LOC110500584 LOC106608769 coding upstream 40169 45869887 ~ 45888657 (+)
cnpy4 cnpy4 coding upstream 78819 45848186 ~ 45850007 (+)
LOC110500577 lsmd1 coding upstream 173458 45744610 ~ 45755368 (+)
LOC110500573 LOC106608761 coding upstream 226164 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 242777 45677661 ~ 45686049 (+)
LOC110500588 LOC106608772 coding downstream 12035 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 86300 46016422 ~ 46020567 (+)
LOC110500595 LOC106608779 coding downstream 221319 46151441 ~ 46172393 (+)
LOC110500598 LOC106608783 coding downstream 271709 46201831 ~ 46210557 (+)
LOC110500597 LOC106608784 coding downstream 286495 46216617 ~ 46266922 (+)
G1743166 NA non-coding upstream 497 45891897 ~ 45928329 (+)
G1743112 NA non-coding upstream 135000 45785850 ~ 45793826 (+)
G1743100 NA non-coding upstream 199621 45728890 ~ 45729205 (+)
G1743099 chd3 non-coding upstream 200066 45728500 ~ 45728760 (+)
G1743098 LOC106608762 non-coding upstream 200865 45727476 ~ 45727961 (+)
G1743648 NA non-coding downstream 253178 46183300 ~ 46183714 (+)
G1743654 NA non-coding downstream 261093 46191215 ~ 46192309 (+)
G1743660 NA non-coding downstream 268377 46198499 ~ 46198707 (+)
G1743077 NA other upstream 218876 45707142 ~ 45709950 (+)
G1743043 NA other upstream 289084 45639296 ~ 45639742 (+)
si:dkey-38p12.3 LOC106608755 other upstream 373237 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 other upstream 434874 45485247 ~ 45517233 (+)
fcer1g LOC106608748 other upstream 480139 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1233782 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2164645 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2394978 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3047204 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3515717 49445839 ~ 49446626 (+)

Expression


Co-expression Network