G1744645


Basic Information

Item Value
gene id G1744645
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 47163904 ~ 47236823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1997841
CTTAACCTTTTATTTTGTTTAATCACCAAATATTGTCAATGGAATTACAAATAAGTTCAATTTTGACCGAAATATGTTTACAAATTTACAGAAAACCATCGTTATACTCAGAATCTGTAGGTATACAGGTCAAGGCACTCCGTAAAGTAGAATGAGTGATGCAGTCAATAAGATTCCATATCATGTACTACAGCAGTCAGCAGTGGTGGTAAAACTTGGCAATGGGAGGACCGCAGTGTTCAGGTTTTTGTTACAGACTACATTCAACCCACACTGCATTGGCAACATTTGGCCACTCCCGGAATACAGTTTGTGATGCATATTCTACGGCACTTTAAACTCAATTTAAAATTATGAAAACATAACTGCTAACAATACAAAAGTTTGACCATATGTGACGCTCAGCTAAGCCTTGGTCATGATCATTAGGCACGAAACAGGAGAAAATTGACAGAAACAGGGATGGACTCATttaacgttgcgttatggtaatgagcttgagtctgtattcacgatcccggatccgggatggggagatcagaaaggttaagcaacgagtcggagtcagaggccgagtcttctctggtatCACCTCCACCCgctacggggtctgagacgctgAAG
>TU1997842
CTTAACCTTTTATTTTGTTTAATCACCAAATATTGTCAATGGAATTACAAATAAGTTCAATTTTGACCGAAATATGTTTACAAATTTACAGAAAACCATCGTTATACTCAGAATCTGTAGGTATACAGGTCAAGGCACTCCGTAAAGTAGAATGAGTGATGCAGTCAATAAGATTCCATATCATGTACTACAGCAGTCAGCAGTGGTGGTAAAACTTGGCAATGGGAGGACCGCAGTGTTCAGGTTTTTGTTACAGACTACATTCAACCCACACTGCATTGGCAACATTTGGCCACTCCCGGAATACAGTTTGTGATGCATATTCTACGGCACTTTAAACTCAATTTAAAATTATGAAAACATAACTGCTAACAATACAAAAGTTTGACCATATGTGACGCTCAGCTAAGCCTTGGTCATGATCATTAGGCACGAAACAGGAGAAAATTGACAGAAACAGGGATGGACTCATGTTGCGCAAAAAGCGTGCCCTAACGAACATAACCCTGTAGTTTCACGTACAGCTCAGACCACGGATTGGCCTTTGTCGTCGTCGTAGCGTTGGTACTGTTCTCCCAGCAGGGGCTGGCGGCCCTCCAGTTTGCTGTAAGAGTGGGAGCGCACGGCACATGTGGTGGCAGCAAAGATTACAGCGACGACGACCAGGGCCGCCACGATGGCAATGGTGATGATCTCAGTCAAAGTTAAAGGAGCAGCCAAGGTTCTCTGGGGCTGTAAGAAACATCTCAGCGTTGGTCACTGGAGGCCAGAAGGGAACCATGTTGTACCCCCTGTTGTGACCAATGGGGGCATTCTCTGAAGGATAGACTGCCAAATCTGCAAAATGTATCCGTTAAGAGTCAGCATATGAACATGTGCCGCTGATGTACAAAGAAAAAATCCTGCCAGAGATAAACAAAGGGTGCATAGTAATCGTGTAATTGTTGTATAATTACCATTTTACCATGTAATTTAGAAACGGCCTGAACCGCATAGTCAAGTACATAGAAGAACATTGTATCTTCAGACAAGCAAGCACTTACAAAGCCAATACATGAAGACAACAGATCAGGTATTGAACATGAGATTGACAGGAGGATGGGATCCGTTACCAGGGGCGTGCCTCCTGAGCCACTCGTCAAAGATGGCATCCGTGAAAGTGTGGAGAAGTACGAAGATGGGGTCGTTGGGCGAGAGGTGGGTCTGTCCCCCTGTCCCGTTCAGAAACAGGTGGGCCAGGTTGTGAAGGCTCCGTACCACTGGGTCGTAGTTTCCCTGGGGGGCACTATAGCCTGTGCACACAACACAGGTAGCTTGTGGATTAAATACAGGAAACTGTGTGTAGTGGATGTGAATCTCGCCAGTAGCATGTTGGCAGGAGTACACCAGTGAAATGGGTGTTTTCACACCTTCCCTAAGACCTAAATCTCTCAGAGTGTCTAGACTCTTGCTCTAAGACAGTTGGCTTTGAGTTGCGTGTGTTATCGTGTGCAGAAGTTTGTTGGTTCACACCCTGCTCGGGACAGAACAGAATGTACTCtgttgcgtgtgtgcatgcgtgcgtgtgtttcGATGTGTATCATCATGCACAACAACCCTCAACGTTCAGTGTGTGTGAGCCTATGTACACTACAGGAAGTGTAGTGATATCGTGTAGACCAGCAATAGCCACTCACCCTCGATGGTGTTCCTGAAGCTCTCTGAAGAGGTGGAGTAGTAGGGAGGGGTGTCAAAGGTGTTCACCTGCAGGCAGTCTGCCACATCCTGGGGCTCAGGGAGACGCTGCACCATGGGGCGGGCCACGTTTCCAGCTGGGTTTCTCCTGATGGGGGTGGTCTCAGTaTGTTGCAGATGGTCCCCAGTGTATCATAGTCCCCCACACTCTCACAGATCACCCTCCAGTTGGAGAAGATGGAGTTGGTGCTGATGGAATTCATATCGAGGTTGCTCCTCGCTCCCAATAGGTCATCTGTGCAGATGTCACAGGTGCTTCCACCAACGGCAAAGTTCCAGTAGGGCAGGGCAAAGGACGGGTCTTGCAGCATAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1997841 False 624 lncRNA 0.41 2 47163904 47236823
TU1997842 True 2047 TUCP 0.48 4 47163904 47167654

Neighbor

gene id symbol gene type direction distance location
LOC110500876 LOC106577625 coding upstream 50842 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 896982 46216617 ~ 46266922 (+)
LOC118936379 LOC106608786 coding upstream 941713 46218549 ~ 46222191 (+)
LOC110500598 LOC106608783 coding upstream 953347 46201831 ~ 46210557 (+)
LOC110500595 LOC106608779 coding upstream 991511 46151441 ~ 46172393 (+)
LOC110500605 LOC106608606 coding downstream 131841 47368664 ~ 47958017 (+)
LOC110500610 LOC106608613 coding downstream 1146031 48382854 ~ 48414134 (+)
LOC110500624 LOC106608622 coding downstream 2356563 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 2369276 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 2374428 49611251 ~ 49623432 (+)
G1744460 NA non-coding upstream 302915 46834804 ~ 46860989 (+)
G1744417 NA non-coding upstream 393840 46769560 ~ 46770064 (+)
G1744346 NA non-coding upstream 468997 46694693 ~ 46694907 (+)
G1744226 NA non-coding upstream 542179 46620809 ~ 46621725 (+)
G1744968 NA non-coding downstream 393805 47630628 ~ 47631885 (+)
G1744969 NA non-coding downstream 394781 47631604 ~ 47632823 (+)
G1745093 NA non-coding downstream 588256 47825079 ~ 47826140 (+)
G1744793 NA non-coding downstream 723760 47960583 ~ 47961550 (+)
G1745174 NA non-coding downstream 728136 47964959 ~ 47965199 (+)
G1743077 NA other upstream 1453954 45707142 ~ 45709950 (+)
G1743043 NA other upstream 1524162 45639296 ~ 45639742 (+)
si:dkey-38p12.3 LOC106608755 other upstream 1608315 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 other upstream 1669952 45485247 ~ 45517233 (+)
fcer1g LOC106608748 other upstream 1715217 45444361 ~ 45449712 (+)
G1746210 NA other downstream 857944 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 1088277 48325100 ~ 48363926 (+)
G1747255 NA other downstream 1740503 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 2209016 49445839 ~ 49446626 (+)

Expression


Co-expression Network