G1746471 (LOC106608612)


Basic Information

Item Value
gene id G1746471
gene name LOC106608612
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48325100 ~ 48363926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1999753
aaaaaaaaaacAATCGACAGAACAAGAGAAAGCAACTCTCCTAACAAATGTATACCATTCAAATGACAGGGTGGTTCATCCAAACTCCCACTTTTCTGTAACTGCTTATTTCAATATCCCTTTTTATAATGGTTTTTTTGGCCATTATGTTAAACCAAAGCAGGTGTACAGAAACATAGGAAAAAAATATGCAAAGCTCAAATTAGAAGCGTGAGAAAAGACAGAATAGCTGGAGGTCTAGTGAGCGACTGCCATTCATGTTGGTGAAATAATACAAGCCCACTAATCCTCCCAAACCGACAGCtttcactcacgcacacacataaTCTGTGACATGGAAAAGTGTACATTTAGCGACCTAACATGACGCGATAACTGGTAAAAATGAATCTAAAACAATTCAAGCAGGGTCTTTTGGAAGACACTGAATGCAATTGTACCAGATCTACATCTTAAACTTGTGCAAGTACCTTCCACCTCCAGGAGACGGGACCCTAACAAAAAAATACTAGACTTATATGTATACTTCAATTTATAAAATACAAAACATTCCCTTTTTGCAATGCAATTTATGAATGTTTGGTAAATGAAGTAGCCATGTTTCCTATTCACTATTGCATATGAACATTATATCCACCAAATCTAAGTAACGTCACTGTACTTACAAAACACATGTCAAATGAAGCCAGGCGGCTCTCAAACCTGACCCTAAATATGTTTCCACTGACCACTCCTGGTCTCCCTAACCATGTCGAGAGCTTGGGACGATAAGGTTCTATCTACATTGTTGTCCAAATGTTGTCATTGACATAgtcttgttctgttcaatgttctctacctataaATTACTCTAAATAcccccaattcatgttgttacacTTAAAAGAATAAGATAAAAaattgctgacaccattcaaaccaatgagggtttGAAACTGTAcagccaattatctcagaatgGTCTTTTAGCAGATAGAGCCTTATCGTGCCAAGCTCTCGGTGTCTTAAACCTCTTAGTCGCTACTAATAATCATTCAAGGTCAATTTTGACAAATTATTGCACATCTTGACAGCTAACAAATACACTGTTGATATTGCAGAAGATCTTATCAAACTTGTCACTGGCTCACACACCGCCTTAGTACTCCAACCTTTTCTTAAATTCCCTTTCAAGCTTCTCTCATTTCCAATTTTAACTTTCTCAGCAATATACATTCACCTGTTCCTCTGAATTCTTGCTGGCTATTATCCTCGTTCACATTCTGGCAATGCCTGCTCACAGGCTCCACTGGTTCACGTCACAAGTCTATTGAATGCATTTTGTGGATGTCCTGAAAAACTACATTTTATCATTTTTGGGCTTAGATAATTAAGATATACCAATATCATATATTTAATTTTCTATGTATTGTGCATTGCAATATTGCAAAGAAACCAACATTGAAAAGCTTTGCTTGAAAAACGAAGATATTATATAGTTGTATACATGTAAAGAGTGAATGCATAGCAGGTGGAAAAATACATCCAAACTTTAtatattaaaggcccagtgcagtcaaaaatgtgaatatcctgtgttttatatatattttatatatatttttccacagtatgaggttggaataatactggggaattgtgaaaattatgataatgccattttaaTGTAAGAGCCTGAAATTTTGGTGGGATGGCGTTTTGGCCTGCCTGCcgacatcaccaggcagtataagttaatataccaataacaAAGATTTAAAAAACGCTCTACCAATAACATCTAGTTTTCAGGTTATGTAACCCTCCCATTAGGCTCGTTCAATTAGGCCCCTCActtagaccactcccagacagtcctagcaaaattcttgcttgagaaattgctctttgctaagacgcaatttgtttgttttttaaccattttaattaaaaaataaaacagtaaggtacttaattcttacacagaaattatttgatattgagatcaaAACAGCTGCATCGGGCCTTTTTAAAATTCTAGCATTTATTAAGAAAAATATGTTGGCTATAAAATGTTGAAAAGGCATCTTAAAAGCTTTCTATGAATATATAGCATTTGTATGAATGTACTGTGCATGTAACTAGATCTACTGTTCTTTTAAGCAAAGATCACTTAATTATGCTTTCAGAATCACTCTTTCCCCACAGCTGCTGGCTTCCACACCTGGGCTGAACTCTTTTTGGCCATGAACCTGGGCTTTGGAGCGGTGCTGCCCCCAGAGATAGACTCAGACTTTGCCGCTATGGGAAAGCTGGGCACCACGTAGGTACTGGGAGGTAGTGGCTGGTATGGGGCTTGGGGTGCTGCTTGGTAGGGGGGGCTATGGGCTGGCTGATAAGGACCTTGGGGGGTCTGTTGGTAAGAAGGGTTTTGAGCTTGCTGCTGGGGTTGATAAGGGGCTGGAGGGGCTTGTTTGTAAGGGGGATTATATGGATGTTGGTAAGGACCAGCAGGAACCTGCTGGTAGGGATTGTTAGATGGCTGGTAAGCATTAGGTGAGGCTGGGTGGTATGGACTATCATGCATGGGTGGTTGAGGGGTAATCCCGTAGAGCTGCTGGGGCTGCTGTGAATAGGGAGCATTCATTTGTCCAGCCGGCTGGACAGGGGCAGCTTGCTCATATCTTATTGGTTGGTTTTGGTTTGGAGGGACTGGGGCAGGCTTTGGTGCGGCGGCCTTGGCAGCCtcggcagcctccactgctggGCCATAAGTAAAGAGGGACGCATTGAGCTGATAAGGCTGATGTTTCATGACATCTATAACGGCAAGGGGTTTGCAGGCAGGTTTGCCTTTCCCTTTCTTTGCTTTGACCGCAGGGCTAGATGGAGGGGGTTGCTTAATGGCCCCTGGTGGGTAGGAAGGGGACTGTATGGGGTTGTAATTCGATGTAGGGGGAGCTCTGCAATTGGGCGAATATTTCCAAGGATGAGGTACGGAGGGAGAGGGCGACGTGGGCCTTGCCTTGTTTGCCTGCGCAGTGGCTGCCTGGGCTTGCTGAGCTGCCTGTGCAGTGGCTGCCAGCACAGTGTCCGAATCCACGACATACTTCTCCATACGAGACTGCCTCTTGGCGAACAAATCGGCTCCTTTCCCCCTAACCGCTGGCATCGACAAAGCCGAGCCCATTCCTCCTACTGGTGCCAAAACGCTTGCCATTGGATTGATGACGGGTGACGAGGACCTTTCGCCAAGTGTGTAAGAGTTAATTCGCTGTGGCGGAGGTGGAGGAGTAGAACAGGGAGCACTTTGTGGAGCATTCCAAGGTTTCGGAGAAGGTTGACACACTCTGTGCATCCGGGTCTGAGTATTCACTGGGGCTTGCTGTGGTTGTGGGGCCCAGGTACTTGTGTGTGTCTGAGGCTGTGCCTGAGCTGGGGCCCATGCATTCATAGGTGGCTGTAAGGGTGCCTGCTGTGGAGGTGGTTGTTGCCAGTTTTGCTGGGGTGGGGATTGGGTTGAAGGTGGTTGGACCCAAGGTGGCTGTGACCGGGCCTGATTCTGATCTGGGGCCCAGGCATTCATGGGTGGCTGTTCTTGCTCTTGAGATAACTGGGCCCATGGAGGCTGGACCTGAGCCTGAGCAGGTGCTGGGGCCCATGCATTCATAGGGGGTTGAGGCTGAGCTGGATGTTGGGGCTGAGCTTGTTGGGCCCAAGGTGGTTGTTGTGGCTGGGTATGGCTCTGTGGTGGTGTCCATGCATTCATTGGAGGCTGAGGTGATGACACCCAAGGTGGCTGAGGCTGGGCCTGGGGCCAAACCTGTTCTGGAGACTGAGGCTGAGGTTGTTTAGCCCAAGGTGCCTGGGGCTGTTGCTGTGCTTGTTCTTGAGGTTGAGCCCAAGGTGCCTGGGGCTGTTGCTGTTCTTGAGGTTGAACCCATTGGAGTTGTGACTGGGCAGGCGCTATAGCCCAAGAATTCATGGGTGGCTGAGGCTGAGGAGGAGGTGGTTGGGGAGTCACCCAAGGGAGCTGTGGTGGGGACTTACTTGGAGCTGGAGCCTGGTGCTTCATTTCAGCAGGTGGCCAAGTACTCACAAGTGGCTGCTGTGATGCCTGTGTTAGTGCCGGAGCCCAGGAACTCACTTGAGGCTCGGGTTGCGAATGAGGCTGAGTTGGTGAGGGACCATTTCCTCCCCAGGCTGGCACTTGCTGGGGCTGCTGCTGCTGTGCCTGGGACCCTGGGGGACTCCATGTGTGTTTGGCTGGAGAGGGGGGCTTGGCAGGAACAGGAGCTTCCTGGGGGGCAAGAGGAGGGGAGGGCTCTGGGGCCAGTTCTGGGGCGGACTCGGTCTCAAGGGCTGCAGCAGGTGCAGGGACGCTATTTTCAGCATGCAGTGGCAACTCCTGGTTGGCCAGCTCAGGCTGAGGGGACCAGGGTGGAGAGTTGGGGTTAATGATGGGTTTGGGAGCGACTGGTGGAGGCGTCTTATGCTTGACCCTTGGTGACTGGAGGAAGTTGCAAGCCTCAGCTCCCAAGCTAAGGTAGTCCTCTTCCGTGCATGACTCGGAATCCAACTTCTTGTCACTCCTGTTGAGGAGATTCAGAAGCTCGGGGTTGGGTGACACTTTGGGTGCTTGTTTGAAATTGAACATTGGCTTGCCCTTGAACCTGTTCCTTGTGTCCTGCAAGATCCCAGACTTGATTGCCGGCGTCGAAATGCGCTCGTCGCGTGAGGCAATCTGCTCTCCCTGACCCATCATCTCTTGGTTGCTCCCACTCACTGGGGGAGAAAACAGGGCGGGCATCTGGTTTTGTAATGAGAAGGGTTGGGCAGTTTGATTGCTCATGGAACTCTGCATTTCATTGGTTTGATGGTTGGCCATGCCATTCATGTTAGACGAGTACTGCTGAATATGCTGCTGTTGGtactcttgctgctggtggtgCTGCTGTTGATTATATTGTTGTTGCtgctggtactgctgctgctcgtactgttgttgttCATGCTGTCT

Function

NR:

description
synaptopodin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1999753 True 4999 TUCP 0.47 3 48325100 48363926

Neighbor

gene id symbol gene type direction distance location
LOC110500605 LOC106608606 coding upstream 367083 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 1212038 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 2058178 46216617 ~ 46266922 (+)
LOC118936379 LOC106608786 coding upstream 2102909 46218549 ~ 46222191 (+)
LOC110500598 LOC106608783 coding upstream 2114543 46201831 ~ 46210557 (+)
LOC110500610 LOC106608613 coding downstream 18928 48382854 ~ 48414134 (+)
LOC110500624 LOC106608622 coding downstream 1229460 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 1242173 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 1247325 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 1290766 49654692 ~ 49662658 (+)
G1746393 NA non-coding upstream 83366 48241503 ~ 48241734 (+)
G1746365 NA non-coding upstream 103294 48221547 ~ 48221806 (+)
G1746311 NA non-coding upstream 143834 48180734 ~ 48181266 (+)
G1746310 NA non-coding upstream 145378 48179509 ~ 48179722 (+)
G1746244 NA non-coding upstream 201959 48122942 ~ 48123141 (+)
G1746601 NA non-coding downstream 166357 48530283 ~ 48530663 (+)
G1746665 NA non-coding downstream 245038 48608964 ~ 48707627 (+)
G1746698 NA non-coding downstream 292148 48656074 ~ 48656446 (+)
G1746701 NA non-coding downstream 293862 48657788 ~ 48658323 (+)
G1746753 NA non-coding downstream 370477 48734403 ~ 48734660 (+)
G1746210 NA other upstream 229981 48094767 ~ 48095119 (+)
G1744645 NA other upstream 1157446 47163904 ~ 47236823 (+)
G1743077 NA other upstream 2615150 45707142 ~ 45709950 (+)
G1743043 NA other upstream 2685358 45639296 ~ 45639742 (+)
si:dkey-38p12.3 LOC106608755 other upstream 2769511 45544516 ~ 45565742 (+)
G1747255 NA other downstream 613400 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 1081913 49445839 ~ 49446626 (+)
LOC110500883 LOC106577571 other downstream 2234984 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 2752519 51116362 ~ 51133346 (+)

Expression


Co-expression Network