G1747906 (LOC106608620)


Basic Information

Item Value
gene id G1747906
gene name LOC106608620
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49459688 ~ 49585178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001316
CAAGGACATCAATGCATTGTACCCTTGTGTTGAGTTACAAGATGAAGTAACCCCTTTAATTGCTGCTGTTGCATTTGCAAATCAGGAGATTTGTACATTTCTTCTGGGAAAAGGTGCTGACCCCAACAAACCATCAAAGAGATATTTAGCACCACTGCATTATGCTGGACTGCATAAAGTTCCAGTGAATATAGTGACAACATTACTGGAAGCAAAGGCAGATCCAAATGGTCTAGCAGAACAACCATTCTTTCCAATTCAATTAGCACATGACAGAGAGGATATTGTGAAGGAGCTTCTCAAATCTGGAGCTTTAATTTGGCTAAATCATGGCGTCCATCCTGCAATTGATCAGAAATTGGCCACAATAATTGGAAACTTTGCTGAAGAGAGTGGGTTCTTTTTCAAAATCAAGCTTTTTTTCAATTTTGCACAAGCAATAAAACAAACATCACCAACAGATGTTTTCAAGCACTATGATCTTCACTTACTAGAGGAGAACCCACAAACCCACCTCACTATGATTGACATGTGCTTTAACATTGAAGGTGCAAATGAAGACGAATACTTCCAGAAAGCCATTAAATGGTTGAACGACTCCAATAAACTAGTTTCCTATGTTGAAGTTGTAAGCAGACGTCTGTCCACAGTTCCTCTGAAATTTAGGGCAGGTGCATTGAAATCCTTAGACTTGTTTGCGCCATGAAGGAAATACCTAATGAGGTGTCACTTACCCTAATTCCTGAGTTAGTGAAACTGCTTTCCTCTAAAACAGAAGATTATCTCGTGCCATTGATCATTGTTACGCTCTATGGCATCACACAGAAGACAAAAGACAAGGATCGTTGGAGCAACTCTGACCTTGAGGAAATATGCAAGCACATTGTCCCATGCACACAGAGGAAGGGTTATCCCTATGAATTGAAGATGTATGCCTATGCGTTGCTAGCAGATCTTTACACATTTAGTTGTGTTCCTGGTTACATCAGCTCTCTGGGACTGACTCCGGTACCTGAAGGACTACTTA
>TU2001310
ATTATTTTGTTCATGTTGAGATGCTATGCTGTATTTGTCTATGGTACTTGCGCTATTCAACTTACCCCCTTGACTCCCAGCATCTAGGTTACAGAATACTGCTTCACAAAATGGAAGCAGCAGATGGTCGACAAGCAGGGATACCTACTTTGTAATCACCATGACCAGCGGGCAAAACTGAGGACAGCTATGGAAGAGGCTCTTTGCAGTGTTCAATGTCTTGAACATACCTGAGAGGAGTTGCCTTCAACTAGTGGAGGATACTCTACCACCAGCCCATTCAGCTAACTGCGCAGCAATGGTGGATTCCTGTGCTGCAGGGAACTTTATTGACCTGACCCTTGCCTCAACTTCAACTAATACCCGCTCTCCTCGCCTTTCCTGGTTCAAGCCCTCGATAATCAGTAATTAGGTTCCGGGACCATCAGACACATCAAACTACTCACTGCGCCCCCATGCAGATGCATCTACCCTCTGTCGGTGGCTGAAACCCAGGCCATCGAAGAGTACATTCATGAGGCGCTCCAACAAGGTTTCATCCGCACGTCCActtctacagggtccgcaggttAATTCTTTGTGGCCAAGGATGGAGGTTTACGCCTATGTATTGATTAGAGGACTCGATGACATCACCAAGTACCGTTACCCTCTCCCATTGTTGCCGGCAGCCATTAAAGAGCTCTGCGGGGCTCAGTTTaactttttaaattttttaaccaAATTGGACCTGCGGAGTGCATTCAATCTCATCTGCATCAGGGAGGAGGATGACAGCTTTTAGCACAATATCTGGTCACTGGAGGATCACTTTGCATGGATGAAAAATTAAAACTACAGTGGAGACCCTGAATCATCCCTCCTGGAAACCACAGGAGAGTTGGGAATGAGAGGTTGGGAAGTGTCGTGATGCTGCCCAAGAGCTTCTAAAAGTGCTACGGAGACAACCTGTCAGTGGAGATCCAAGCTGTCCTCTGAATTGACGATAAAGATGGATGGCAAACAGCCCTACCCTGAGAACATGTTGGGGTTACTACGCTTCATACGCAACCTCCATGAGCACTATGCTGAGGATTTAGAATCTGTTGACCTGATGAAGATGTTCCCTGATCTCTTTGGATGCGTCTACATGTTGGCCAAGAAACAGAGCTGGAATTCAAGGCC
>TU2001309
AAGGGTTTTTACGTCTTCCAGAGCTTGACAGTAGCGGTATTGTAAGATACATGGACTTTGCAGAAGACAGTTTCTTTGGTTATCTTGCTCTTCAGCTCTGTGAATACACTCTGGATGAGTACATTAATACACACCTGTCCAAGGACGACACTCCTGCCCTGATGAAAATCACTCAAGAGGTGCTCCGCAGTTTAAGTGTCTTTCATGGTCCAACTACCAAAGTCCTTCATCGGGATATCAAACCTCAGAATGTTTTGATAGATATCAATGGAAATGCAAAATTGGCAGATTTTGGCATAAGTCGCAGATTGACAGTGGAACAAACAACTCGATACACAGTCCCTGCGGGAACAAAATGCTGGATGGCCAAGGAGACGTTAGACAAACAAGGCTCTGGATATAAGAGGAG

Function

NR:

description
uncharacterized protein LOC110500620

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001316 False 1027 TUCP 0.41 2 49459688 49477063
TU2001310 False 1164 lncRNA 0.48 5 49564149 49583321
TU2001309 True 409 TUCP 0.43 2 49584606 49585178

Neighbor

gene id symbol gene type direction distance location
LOC118942941 LOC106608618 coding downstream 52188 49506252 ~ 49511961 (-)
LOC110500619 LOC106608618 coding downstream 62085 49493629 ~ 49502064 (-)
LOC118942940 LOC106608618 coding downstream 79861 49470621 ~ 49484288 (-)
LOC110500618 LOC106608618 coding downstream 102819 49456426 ~ 49461330 (-)
LOC110500878 LOC102779023 coding downstream 140624 49392218 ~ 49424330 (-)
LOC110500879 LOC106608620 coding upstream 131 49583452 ~ 49585199 (-)
LOC110500626 LOC106608623 coding upstream 52698 49636019 ~ 49654484 (-)
trnaa-ugc-150 NA coding upstream 83143 49666464 ~ 49666539 (-)
LOC118942791 NA coding upstream 228494 49811815 ~ 49819364 (-)
LOC110500634 LOC106608634 coding upstream 512361 50095682 ~ 50169597 (-)
G1747754 NA non-coding downstream 182798 49381017 ~ 49381351 (-)
G1747707 NA non-coding downstream 225062 49338468 ~ 49339087 (-)
G1747704 NA non-coding downstream 230684 49333242 ~ 49333465 (-)
G1747691 NA non-coding downstream 245742 49318204 ~ 49318407 (-)
G1747933 NA non-coding upstream 3624 49586945 ~ 49587226 (-)
G1747935 NA non-coding upstream 6740 49590061 ~ 49590331 (-)
G1747938 NA non-coding upstream 22176 49605497 ~ 49605868 (-)
G1747940 NA non-coding upstream 22865 49606186 ~ 49608415 (-)
G1747937 aco1 non-coding upstream 35023 49618344 ~ 49623432 (-)
G1747908 LOC106608618 other downstream 49985 49512069 ~ 49514164 (-)
G1746833 LOC106608613 other downstream 1153396 48408491 ~ 48410753 (-)
G1743697 NA other downstream 3390415 46171967 ~ 46173734 (-)
G1747934 NA other upstream 4375 49587696 ~ 49588788 (-)
LOC110500654 LOC106608650 other upstream 950684 50534005 ~ 50542563 (-)
G1749122 LOC106608652 other upstream 959114 50542435 ~ 50552525 (-)
LOC110500668 trmt44 other upstream 1453382 51036609 ~ 51051426 (-)
G1750625 NA other upstream 1653564 51236885 ~ 51237163 (-)
LOC118936391 NA coding downstream 68060 49383404 ~ 49391628 (-)
LOC110500614 LOC106608616 coding downstream 484363 48915559 ~ 48975325 (-)
LOC110500613 LOC106608615 coding downstream 726878 48675649 ~ 48732810 (-)
LOC110500612 LOC106608614 coding downstream 806224 48420635 ~ 48653464 (-)
LOC118942942 NA coding upstream 661364 50246542 ~ 50248992 (-)
G1747687 NA non-coding downstream 152913 49306461 ~ 49306775 (-)
LOC110500942 NA other downstream 3646795 45809435 ~ 45813290 (-)
G1743429 LOC105030512 other downstream 3687257 45770822 ~ 45772431 (-)

Expression


Co-expression Network