G1749122 (LOC106608652)


Basic Information

Item Value
gene id G1749122
gene name LOC106608652
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50542435 ~ 50552525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2002708
CCGAACACGTTTCCTGCTAAAGTAGAAAGGATCAAATGGTTTTTGAAAAGAAGTCTTCGGcCCGTGTAGCGGAGGCAGGACAGAGGCGTGTGTTGGACGATGCAACACGCCAGCGGAGGTTAAATCGCCAGCTGGATGCTCTAGAGAAGGACAACTTCCAGGatgaccctctctcctccctgcctccctctggtCCTACTGCCCGCCTGCCCGCCTTTAGCGAAGGAGAGGAACCTGGTAAGAAGAAGAGGAAAACTAGAGGTGATCACTTCAAACAGAGATTTCGCAAAAACTTCCAGACTCTACTAGAAGAAGAGAATGTGTCTGAGAGGGAGGAGCCTAACTACCTGTCAGCTGCAGCCCCTCCCTCCTCGCTCCCCCCTCGTCTGTTCTGCTCCGTCTGTGGATTTCCTTCCTCCTACACCTGTTGCTCCTGTGGGGGGCGCTATTGTTCCACACGCTGTCTTATCACGCACAGAGAGACCAGgTGTCTGAAGATGACTCTGTAGCAGCTGATCTGACTATACCTGGTCATGCTCACAAAATGTGGATGGTAAATTCTTCTACCTGTAGCTGTATAGAATGTTACAACACAGGAACGGCGCTACGGATAATGACCGTGTACCAGAGATGCTATGGAGAGAACACTACCAGAGAAGTAATGGGGAACGCTACTAGAAAGTTACAAACATGCACACAGTGGCTCAGCACTCTGCGGTGTGACGTCAGTGTTGTGGAGTAGGGTCTAAAGCAGtagtggtgcgtgggtaaaatcactggggaagccagaaaaaaagaaaaaagccatattacaacctatgtgttataattgcattgtttgctctataacttGTAAATTCATATTACTTCACAAAtaggtctatcactctgtcatacagtacacacttatttttttgttgtcctagatTACCTGGcgaaaatgcttgctcgctagcttaacttccattcatgggaaatgttatctagttaacattagccttctacatctagctacatattgaacttccatcgtctcaggccaggggcacaatgtatgattTTCTGTTTGGAACAGAAtcgccgttataatcattggccggtacggagaattaagtaaaaccacaagtccaaatccctatctccatccatggctaatttaagaAAGGGacaactttagctagctagccaccggaggacaacaacacaacgagattcAACAATTCAATTTGTTTCTGTCAATGATTAATGCTTTCAATGCGTTTTGATAGGAGTGATTCcaaaatccaagctggcttcccttgactttttttttttttttcttttggcagaccaggaccattcacagttgagcttgtTCAATTTAGCTCAATGTTGACTGGCTAATTGTTTATACTTTTTTTATCAAGAGGCcagatgctcgctggcttcccttgcattccgTTCAGTGCTACGGGCTGCAGCaatggaccagacagcatcagatagatggcctacacgtgtagagacagaggggcgctgttttgctTGCCCGGAAGCTTTCTCCAGTGATATGCATTCCTCCTCATGCAAATTGAAAATTATGGAAAACAGACACaaaagattaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatattttttttttacttggtcAATTTATGGGGGAagcttggcatccatgaatacacgtcACTGGCCTGAACGGGGCAGAGACAGCGCAGGAGTAAGGGAGGGGTTTGTGTCGTGG
>TU2002707
CCGAACACGTTTCCTGCTAAAGTAGAAAGGATCAAATGGTTTTTGAAAAGAAGTCTTCGGcCCGTGTAGCGGAGGCAGGACAGAGGCGTGTGTTGGACGATGCAACACGCCAGCGGAGGTTAAATCGCCAGCTGGATGCTCTAGAGAAGGACAACTTCCAGGatgaccctctctcctccctgcctccctctggtCCTACTGCCCGCCTGCCCGCCTTTAGCGAAGGAGAGGAACCTGGTAAGAAGAAGAGGAAAACTAGAGGTGATCACTTCAAACAGAGATTTCGCAAAAACTTCCAGACTCTACTAGAAGAAGAGAATGTGTCTGAGAGGGAGGAGCCTAACTACCTGTCAGCTGCAGCCCCTCCCTCCTCGCTCCCCCCTCGTCTGTTCTGCTCCGTCTGTGGATTTCCTTCCTCCTACACCTGTTGCTCCTGTGGGGGGCGCTATTGTTCCACACGCTGTCTTATCACGCACAGAGAGACCAGgTGTCTGAAGATGACTCTGTAGCAGCTGATCTGACTATACCTGGTCATGCTCACAAAATGTGGATGGTAAATTCTTCTACCTGTAGCTGTATAGAATGTTACAACACAGGAACGGCGCTACGGATAATGACCGTGTACCAGAGATGCTATGGAGAGAACACTACCAGAGAAGTAATGGGGAACGCTACTAGAAAGTTACAAACATGCACACAGTGGCTCAGCACTCTGCGGTGTGACGTCAGTGTTGTGGAGTAGGGTCTAAAGCAGtagtggtgcgtgggtaaaatcactggggaagccagaaaaaaagaaaaaagccatattacaacctatgtgttataattgcattgtttgctctataacttGTAAATTCATATTACTTCACAAAtaggtctatcactctgtcatacagtacacacttatttttttgttgtcctagatTACCTGGcgaaaatgcttgctcgctagcttaacttccattcatgggaaatgttatctagttaacattagccttctacatctagctacatattgaacttccatcgtctcaggccaggggcacaatgtatgattTTCTGTTTGGAACAGAAtcgccgttataatcattggccggtacggagaattaagtaaaaccacaagtccaaatccctatctccatccatggctaatttaagaAAGGGacaactttagctagctagccaccggaggacaacaacacaacgagattcAACAATTCAATTTGTTTCTGTCAATGATTAATGCTTTCAATGCGTTTTGATAGGAGTGATTCcaaaatccaagctggcttcccttgactttttttttttttttcttttggcagaccaggaccattcacagttgagcttgtTCAATTTAGCTCAATGTTGACTGGCTAATTGTTTATACTTTTTTTATCAAGAGGCcagatgctcgctggcttcccttgcattccgTTCAGTGCTACGGGCTGCAGCaatggaccagacagcatcagatagatggcctacacgtgtagagacagaggggcgctgttttgctTGCCCGGAAGCTTTCTCCAGTGATATGCATTCCTCCTCATGCAAATTGAAAATTATGGAAAACAGA

Function

NR:

description
PREDICTED: zinc finger HIT domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2002708 False 1776 TUCP 0.44 5 50542435 50552525
TU2002707 True 1591 TUCP 0.46 5 50542620 50552525

Neighbor

gene id symbol gene type direction distance location
si:ch73-269m23.5 LOC106608694 coding downstream 8556 50531099 ~ 50533879 (-)
larp7 larp7 coding downstream 24213 50508497 ~ 50518222 (-)
LOC110500648 plin2 coding downstream 40173 50497065 ~ 50502262 (-)
LOC110500644 fa29a coding downstream 59663 50476029 ~ 50482772 (-)
LOC110500944 NA coding upstream 399507 50952032 ~ 50978597 (-)
LOC110500666 LOC106608661 coding upstream 429721 50982246 ~ 50992851 (-)
LOC110500667 LOC106608662 coding upstream 443836 50996361 ~ 51002663 (-)
LOC110500668 trmt44 coding upstream 484084 51036609 ~ 51051426 (-)
LOC110500670 LOC106608666 coding upstream 516851 51069376 ~ 51084011 (-)
G1749098 NA non-coding downstream 91077 50449549 ~ 50451358 (-)
G1749064 NA non-coding downstream 138076 50360285 ~ 50404359 (-)
G1749013 NA non-coding downstream 186725 50353893 ~ 50355710 (-)
LOC110500880 LOC106608636 non-coding downstream 256093 50272053 ~ 50288270 (-)
G1749004 NA non-coding downstream 271245 50270980 ~ 50271190 (-)
G1749149 NA non-coding upstream 33906 50586431 ~ 50586636 (-)
G1749154 LOC106608695 non-coding upstream 39038 50591563 ~ 50598287 (-)
G1749168 NA non-coding upstream 64802 50617327 ~ 50617528 (-)
G1749178 NA non-coding upstream 80477 50633002 ~ 50633320 (-)
G1749180 NA non-coding upstream 85835 50638360 ~ 50638869 (-)
LOC110500654 LOC106608650 other downstream 740 50534005 ~ 50542563 (-)
G1747934 NA other downstream 953647 49587696 ~ 49588788 (-)
G1747906 LOC106608620 other downstream 957257 49459688 ~ 49585178 (-)
G1747908 LOC106608618 other downstream 1028271 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 1040508 49493629 ~ 49502064 (-)
G1750625 NA other upstream 684360 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 933175 51485700 ~ 51501323 (-)
G1751128 NA other upstream 1575473 52127998 ~ 52128318 (-)
LOC110500888 peli3 other upstream 2822144 53370137 ~ 53405755 (-)

Expression


Co-expression Network