G1749154 (LOC106608695)


Basic Information

Item Value
gene id G1749154
gene name LOC106608695
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50591563 ~ 50598287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2002759
cgccgaatacaacaatgaattgcttgcttacaagcccttaaccaacaatgcagttttaagaaaaggAAACAGACAATATAATCACATCAGTGCAAACACTTAAAAGCCTCATGCAAccgtttttatatcaatatcaaattacttctgggtaacaattaagaacCTTACTATAATAGTTTTTGATAGGACTGTCAggaagtggtctgagtgggaggggaatgccatgcaaacctgctgatttaaaaaatgttctTAACCTTCATTTAAACAGGAAAAGCACATTAAGACCCTCTTTTTCAATGGAGACCTGGCCAAAAAGGcaacaacaatcaatacattacagaattaTAACATAAAACTATACGATTCAACAACATGTTccagcctttaaaaaaaaattacactCAGTCTCTcatcaaaaataaaaatgtaaaggccctgtgtagattgtattttcaaccagcaactatcaggaataacactgatcaaatcttttcacacttttttgactgcactgggcctttaagttgTATCAGATAACAAAAAGTATAAAATTGTCACTCTGGAAATAAACATCATGCACATAAGACATGAAACAGTATAGCACAAAGTCAAGCCATAGGCCAGGGCTGcacaaccctcttcctggagatctaAATAGCTATTAAATTCATAAAATATACAGAACACAAATATTTACAATACATATCATCTCATAGCAACAGTGCAAACCCCAAAACTTTGAAACCCATGAAACTTTGAAACCGTTTAAAAATTACATTTTATATCTAAAATACATTAATATAGCTTCATGTATTCAAGCTGCAATTGTTGCTCTTGTCAGTCACTTTGATGATTGGATTGATTTAGTACACTCTGTTGTTTTCTGCCTTGATTGTTATAACACTGGTTTGTAAGGTTTAAAATTATGACAATTatgacaatgatgatgatggtgatgatgaagtAGCCAATGTTCTGTCAAGCGCTATTACTGTACAAAAATGTATTAATGGAACTCTTTCCCCTTTCTGATCCTTTCCTCACAATACAGTCACATGATTGTTGTCTTTGCCTCCCTCATAATCTTCAGACCAGATAGCACTACCAGAGGACTGATGCAGGTGTATCAGCAAACCTCCCCGTCCACTTTCTTCTCCTCCCACTGCTCCCTCATCACCTTTGCTATCCCCCTTTTCTTCCATATTCTCCTCTCGCTtcccctcacactctctcctctccttcttctcgtCCATGACCTTCACACTCTCCGTCAGGCCACAGCCCTCCGCACTGGAGTAGTCATCCAAAGAGTCGTCCACTCtgccctccctctcCTACAGTCTCCTCATCCTCACTGAGAGGCCAAAGGCGACGCCTGAACCACACCTCCAGGACTTGGACCCCGCCCCTCACCCGGTCCCTGGCCCCACCCTCCCCAAGGACCAGTTGGTGGACTGTGTACTGGCCATTAGTCTGGCGGTTTAGCCACATGTACAGGACGACCAGGAGGGCAACGAGGGTGACCAGGATGAAGAAGACAGTCAAGACGACAAAGGAGGATGTGGTTTGGTCTTTCATTTCTGGATCGTAATTAGTCATGCCTCTTCAAATAGTTCTCAGAAAAGTTGAAGAAATCTTTGCTCAATCCAAGGTAAAACTGCTGCGGTGGAGATCCAGTTTATTTCCTTTCAATTGGAGGTGATTCATACATTGATTTATTAATGACTGGATCAATGTGTTGCTATAAAATGAACAGTCTGAATGATGGTTTCAAGAGAGACAGACTCAACAAGGCAGGTGTTAGTGGTGGCACTTTTTTAACAAGAGATGGGGATACAGAAACTTAAAGATAGGCATGTAAGAAATAGAGTGAGAGGGGATATAATgtgggcggagagagagaaacacagagagacagagagagagagagagaacctcctGCCGAATGTGTGGCCATATTAGAGAcacgtatttccctcagattacacagatccacaaagaatttgaaaacaaattcaattttgataaactcccatatctattgggtgaaataccacagagTGTAATCACatcagcaagatgtgtgacctgttgccacaagaaaagggcaaccagtgaagaacaaacaccattgtaaatacaacctatatttatgtttatttattttccctttcgtactttaactatttgcacatcattacaacaatgtactgagacaaagagagaaagacagagagagagacagatagagagagagagagactttgatagattgatagataaaCCAACCCACTAACTCAAGcagggtgaaggagaaatgttgCAAGGGGAGATAAGAAAGTAAAGTGT

Function

NR:

description
uncharacterized protein LOC110500658

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2002759 True 2352 lncRNA 0.40 6 50591563 50598287

Neighbor

gene id symbol gene type direction distance location
LOC110500655 LOC106608652 coding downstream 38965 50542604 ~ 50552598 (-)
LOC110500654 LOC106608650 coding downstream 49000 50534005 ~ 50542563 (-)
si:ch73-269m23.5 LOC106608694 coding downstream 57684 50531099 ~ 50533879 (-)
larp7 larp7 coding downstream 73341 50508497 ~ 50518222 (-)
LOC110500648 plin2 coding downstream 89301 50497065 ~ 50502262 (-)
LOC110500944 NA coding upstream 353745 50952032 ~ 50978597 (-)
LOC110500666 LOC106608661 coding upstream 383959 50982246 ~ 50992851 (-)
LOC110500667 LOC106608662 coding upstream 398074 50996361 ~ 51002663 (-)
LOC110500668 trmt44 coding upstream 438322 51036609 ~ 51051426 (-)
LOC110500670 LOC106608666 coding upstream 471089 51069376 ~ 51084011 (-)
G1749149 NA non-coding downstream 4927 50586431 ~ 50586636 (-)
G1749098 NA non-coding downstream 140205 50449549 ~ 50451358 (-)
G1749064 NA non-coding downstream 187204 50360285 ~ 50404359 (-)
G1749013 NA non-coding downstream 235853 50353893 ~ 50355710 (-)
LOC110500880 LOC106608636 non-coding downstream 305221 50272053 ~ 50288270 (-)
G1749168 NA non-coding upstream 19040 50617327 ~ 50617528 (-)
G1749178 NA non-coding upstream 34715 50633002 ~ 50633320 (-)
G1749180 NA non-coding upstream 40073 50638360 ~ 50638869 (-)
G1749185 NA non-coding upstream 47851 50646138 ~ 50646392 (-)
G1749223 NA non-coding upstream 108383 50706670 ~ 50708436 (-)
G1749122 LOC106608652 other downstream 39038 50542435 ~ 50552525 (-)
G1747934 NA other downstream 1002775 49587696 ~ 49588788 (-)
G1747908 LOC106608618 other downstream 1077399 49512069 ~ 49514164 (-)
LOC110500619 LOC106608618 other downstream 1089636 49493629 ~ 49502064 (-)
G1750625 NA other upstream 638598 51236885 ~ 51237163 (-)
c21h11orf68 cssa07h11orf68 other upstream 887413 51485700 ~ 51501323 (-)
G1751128 NA other upstream 1529711 52127998 ~ 52128318 (-)
LOC110500888 peli3 other upstream 2776382 53370137 ~ 53405755 (-)

Expression


Co-expression Network