XLOC_036807


Basic Information

Item Value
gene id XLOC_036807
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52933059 ~ 52935470 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072562
tatgcactcattcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcatacactacggtcagttcagttcatcaattcccacgccaacacagggagaacatgcaaactcaatgacccagccgggactcaaaccagtgaccttcttgctgtgaggccccagtgctaaccactgagccactgtgctgcctatgACCCGACATGTATTTGGAAAATGTTTTACACAAAGTAGAAGCGAGTGAAACTGACAAATAACTCAAAGGAAGTCATCATGAATCAATACTACATTTACTAAATATACTAAACTAAAATTAGAAATGAAAAGAAACGAGTGCTCTAaacatgctgggttgttttaatgttgggtcaaatatggactaatatgattacattttaaaattaaaattagattAATCTTTTGAACCCAGCTGTTTGgttttgtccacatttgaccttattttattttctacacAAAGCAGCAGCAGCCGGTACAAATGTGAAGTTTGAGAAATAGTTTAGAGAAGGTCATATTGAATTAGCGGTAAAGAGACTCAAATAAATGTTGACATGAAAAGAAATTTACTCTGTATAAAATGCTGGGTGGTTTTAACCtcatgttgggtcaaatatagagaAACTCGACCATTGGgttcatttttaatataaaattttgaTTCATCTTTTGAACCCAACTCTTagctttgtccatatttgacccagtgttggATTGACCCAACATTTCTTAGCAATTATTTTCTACACAAAGCAGCAGCGGCgagtaaaaatgtgaattttGACAAACAATTTAAAGAAAGTCAGAATGAATTAGCAGTAAAGAGActcataaatgtaaataataaagtacACTATACATGCagagttgttttaacccaatgttgggtcaaatattgacaaacacGACCATTGGGTTCATTTAAAATTAGATTTAGATTACACTTTTGAGCCCAACTGTTAGCTTTGTCCACATCTGACCCAGTGTTGGATTGACccaacattcattctttcattcattcattttcttgttggcttagttcctttattaatccacagcagaatgaaccgccaacttatccagcacgttttttacgtagtggatgcctttccagctgcaacccatctctgggaaacatccacacacacacacacacacacacacacacacacacacacacaaacacacacacacactcatacactacggaaaatttaggctacccaattcatctgtaccg

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0003002 regionalization biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072562 True 1284 lncRNA 0.38 2 52933059 52935470

Neighbor

gene id symbol gene type direction distance location
XLOC_036805 NA coding downstream 50283 52877822 ~ 52882776 (-)
XLOC_036804 nr5a1a coding downstream 62003 52833443 ~ 52871056 (-)
XLOC_036803 fgf17 coding downstream 187891 52732107 ~ 52745168 (-)
XLOC_036802 tubb2b coding downstream 217148 52713232 ~ 52715911 (-)
XLOC_036801 NA coding downstream 301575 52627507 ~ 52631484 (-)
XLOC_036808 b3galt4 coding upstream 171910 53107380 ~ 53108207 (-)
XLOC_036809 rbsn coding upstream 215502 53150972 ~ 53169445 (-)
XLOC_036810 sult1st4 coding upstream 235532 53171002 ~ 53179683 (-)
XLOC_036811 gabrd coding upstream 249609 53185079 ~ 53198154 (-)
XLOC_036812 CU914536.1 coding upstream 421309 53356779 ~ 53356896 (-)
XLOC_036797 NA non-coding downstream 527913 52401657 ~ 52405146 (-)
XLOC_036796 NA non-coding downstream 622432 52297701 ~ 52310627 (-)
XLOC_036793 NA non-coding downstream 944712 51986810 ~ 51988347 (-)
XLOC_036813 NA non-coding upstream 528748 53464218 ~ 53467703 (-)
XLOC_036822 NA non-coding upstream 846011 53781481 ~ 53781852 (-)
XLOC_036824 CABZ01090219.1 non-coding upstream 905832 53841302 ~ 53851585 (-)
XLOC_036829 NA non-coding upstream 1126227 54061697 ~ 54068296 (-)

Expression


Co-expression Network