XLOC_003681 (kcnab2a)


Basic Information

Item Value
gene id XLOC_003681
gene name kcnab2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41540862 ~ 41699904 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007150
ATGTATCCCGAATCGACCACAGACTCTCCTGCCCGGCTCTCTCTCAGACAGACCGGCTCTCCGGGCATGGTCTACAGTGCGAGATACGGGAGCCCAAAACGCCAGCTGCAGTTTTACAGAAACCTGGGGAAGTCTGGCCTGAGAGTCTCATGTCTTGGATTAGGAACTTGGGTGACGTTTGGAGGACAGATCACGGATGAGATGGCAGAGCAGCTGATGACTCTGGCGTACGAGAACGGGATCAATCTGTTCGACACGGCAGAGGTCTACGCTGCAGGAAAGGCGGAGGTGGTGCTGGGCAACGTCATAAAGAAGAAAGGATGGAGACGCTCCAGTTTAGTCATCACAACCAAAATATTTTGGGGTGGAAAAGCAGAGACGGAGAGAGGATTGTCAAGAAAACACATTATAGAAGGTTTAAAGGCGTCGTTGGAGAGATTGCAGTTAGAATATGTGGACGTAGTGTTTGCAAACAGACCTGACCCCAACACACCCATGGAAGAAACGGTGCGGGCGATGACCCATGTGATCAATCAGGGAATGGCGATGTACTGGGGAACGTCACGCTGGAGTCCGATGGAAATCATGGAAGCATATTCAGTGGCCCGACAGTTCAACCAGATCCCACCAATCTGTGAGCAGTCGGAGTATCACATGTTCCAGAGAGAGAAAGTGGAGGTGCAGCTCCCTGAGCTCTTCCATAAGATCGGTGTGGGTGCGATGACATGGTCCCCGCTGGCCTGTGGGATAATCTCAGGGAAATATGACAGCGGGGTGCCGCCGTACTCACGTGCCTCACTAAAGGGCTACCAGTGGTTGAAGGACAAGATCTTGAGCGAGGAGGGCCGACGCCAGCAGGCGAAGCTGAAAGAGCTGCAGGCAATCGCTGAGCGGCTGGGCTGCACACTGCCACAGCTAGCCATCGCGTGGTGCCTGAGGAATGAAGGTGTGAGCTCTGTGCTGCTCGGAGCCTCCAACACGGACCAGCTGATGGAGAATATTGGAGCAATACAGGTTCTTCCAAAGTTATCGTCCTCCATCGTGCACGAGGTGGACAGTATCCTGGGCAACAAACCCTACAGTAAAAAGGACTACCGCTCCTAG
>TCONS_00007151
ATGTTTGCGGGCGGGTACGCGGGGGGGACCGTTGGGCGCCGGAAATCCATTCTCCCCTCCGAAAATCTGCAGATCCCCAAACCGGCGGGGGCGAGCGGCGTACGcaagagcagcagcagcagcagcggagGCAAGATGCTGTCCATGTCCTACAGCGAGAGTATTCGGAGTGGTATTAGCCGCTACCACTCCGATCAGGGTCTGAACCAGCCTCCGAGGCAGACGGACCAGGCCGAACTCCAGCGGCTCAGGGAGCAAAGAGTCGCTGCCCAAATCAAGAACATGGAAGACTTCCTCAAGATGAATGGACTGGCGCTGGAGGAATGCGTATCGTACCAGACGGGCATGAAGTACAGAAACCTGGGGAAGTCTGGCCTGAGAGTCTCATGTCTTGGATTAGGAACTTGGGTGACGTTTGGAGGACAGATCACGGATGAGATGGCAGAGCAGCTGATGACTCTGGCGTACGAGAACGGGATCAATCTGTTCGACACGGCAGAGGTCTACGCTGCAGGAAAGGCGGAGGTGGTGCTGGGCAACGTCATAAAGAAGAAAGGATGGAGACGCTCCAGTTTAGTCATCACAACCAAAATATTTTGGGGTGGAAAAGCAGAGACGGAGAGAGGATTGTCAAGAAAACACATTATAGAAGGTTTAAAGGCGTCGTTGGAGAGATTGCAGTTAGAATATGTGGACGTAGTGTTTGCAAACAGACCTGACCCCAACACACCCATGGAAGAAACGGTGCGGGCGATGACCCATGTGATCAATCAGGGAATGGCGATGTACTGGGGAACGTCACGCTGGAGTCCGATGGAAATCATGGAAGCATATTCAGTGGCCCGACAGTTCAACCAGATCCCACCAATCTGTGAGCAGTCGGAGTATCACATGTTCCAGAGAGAGAAAGTGGAGGTGCAGCTCCCTGAGCTCTTCCATAAGATCGGTGTGGGTGCGATGACATGGTCCCCGCTGGCCTGTGGGATAATCTCAGGGAAATATGACAGCGGGGTGCCGCCGTACTCACGTGCCTCACTAAAGGGCTACCAGTGGTTGAAGGACAAGATCTTGAGCGAGGAGGGCCGACGCCAGCAGGCGAAGCTGAAAGAGCTGCAGGCAATCGCTGAGCGGCTGGGCTGCACACTGCCACAGCTAGCCATCGCGTGGTGCCTGAGGAATGAAGGTGTGAGCTCTGTGCTGCTCGGAGCCTCCAACACGGACCAGCTGATGGAGAATATTGGAGCAATACAGGTTCTTCCAAAGTTATCGTCCTCCATCGTGCACGAGGTGGACAGTATCCTGGGCAACAAACCCTACAGTAAAAAGGACTACCGCTCCTAGTGTGTATCCGGACGGGACCGGACGCTCCGCACACACCTTTGCCTGATCCTCCGTTCGCTTCAGCTTTTACTGAATGAGTTCCGGCAGCATGAGACGGGCAAGCACCCACAAACCCCGGAGAGCAAGACTTTTACAACACCAAGGGCaagaaacacacaaaaacaaactttcAAAAAAGACACATTCACTGACCGAGGCGGTGGAAAATGCAAAGGCATCGAAGATACGGATTGATCTGCAGATAAG

Function

symbol description
kcnab2a Predicted to enable oxidoreductase activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in several cellular components, including axon; cytoskeleton; and synapse. Predicted to be integral component of membrane. Orthologous to human KCNAB2 (potassium voltage-gated channel subfamily A regulatory beta subunit 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140515-2 Predicted to enable oxidoreductase activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in several cellular components, including axon; cytoskeleton; and synapse. Predicted to be integral component of membrane. Orthologous to human KCNAB2 (potassium voltage-gated channel subfamily A regulatory beta subunit 2).

Ensembl:

ensembl_id ENSDARG00000087247

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007150 False 1104 mRNA 0.54 15 41540862 41699658
TCONS_00007151 True 1587 mRNA 0.54 14 41560792 41699904

Neighbor

gene id symbol gene type direction distance location
XLOC_003679 park7 coding upstream 64867 41459408 ~ 41475995 (+)
XLOC_003680 BX571706.1 coding upstream 75626 41465107 ~ 41465236 (+)
XLOC_003678 pax7a coding upstream 167914 41242644 ~ 41372948 (+)
XLOC_003677 CABZ01087025.1 coding upstream 305772 41223485 ~ 41235090 (+)
XLOC_003676 CABZ01087025.2 coding upstream 339590 41192329 ~ 41201272 (+)
XLOC_003682 akr7a3 coding downstream 138132 41838036 ~ 41850086 (+)
XLOC_003683 iffo2b coding downstream 158903 41858807 ~ 41929506 (+)
XLOC_003684 NA coding downstream 233196 41933100 ~ 41934619 (+)
XLOC_003685 aldh4a1 coding downstream 236531 41936435 ~ 41960276 (+)
XLOC_003686 her15.1 coding downstream 282055 41981959 ~ 41984487 (+)
XLOC_003369 CR854846.2 misc upstream 25417780 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 28828866 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 28846599 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 28855263 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 28860834 12679732 ~ 12680028 (+)
XLOC_003671 NA non-coding upstream 584739 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding upstream 640973 40897326 ~ 40899889 (+)
XLOC_003687 NA non-coding downstream 314099 42014003 ~ 42018127 (+)
XLOC_003688 NA non-coding downstream 335883 42035787 ~ 42036989 (+)
XLOC_003689 NA non-coding downstream 342655 42042559 ~ 42069664 (+)
XLOC_003690 NA non-coding downstream 353347 42053251 ~ 42054601 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_00220530_00241371 KCNAB2A, KCNAB2 coding CI01000057 null 219465 ~ 242544 (+)
bowfin (Amia calva) AMCG00002130 kcnab2a,LOC108431628,LOC108255041 coding CM030136.1 CM030136.1 4192660 ~ 4219877 (+)