XLOC_036827 (cdk11b)


Basic Information

Item Value
gene id XLOC_036827
gene name cdk11b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53948194 ~ 53960349 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071884
ATAGTTTTTCCGGTGTTGTGAAAACGCGCCGACTGATTCACAGgGGGTGAGTTGGAGCTGATGGGGGACGAAAAGGAAACCTGGAAAGTGAAAACGTTAGACGAGATCCTCCAAGAGAAGAAACGCAGACGAGAGCTGGAAGAGAAGAGCGACCCCAAGAGAATCAAGAACgCAGATGATCGGGAACTCAAACGGGACACTCCGGAGGAAGGAGAACTTCGAGACCACAGAATGGAAATAACGATTAGAAACTCACCTTACACACGAGAGGACTCCACTGAAGACAgAGGAGAAGAGGACGAGTCTCTGGCCATCAAACCTCCACAGCAGATGACAAGAAAAGACAAGAACTACCACCGAAAAGAGGAGAAGAGGAAGGACAAGAGGCGGCGCAGGAGTCACTCTGCAGAGGGAGCAGAGAAACACCCCCGCACGAAAGACAAAGAGAAGGAGCGCGAGAACGAGAGGAGGAAACGACAGTGGCACGAGGACAACAAAGCTCGCCAGGATTATGAGCGCCAGAAACGCAGGGATCAGGCCCGAGCTCATTCCCGCAGAGAGAGgGATCGTCTGGAGCAGCTGGAGCGCAAACGGGAGCGAGATCGTAAACTGAGGGAGCAGGAGCAGAGAGAGCAGCGGGagctggaggagagagagaggagagcaAAGGAGCGACGCAAGGACAGAGACACACGCCGCGATGtGCCCATCTCCCATCACCGAGTGGCTCCTGCTGAGGAATACACAGATAAAGCACGTTTAAGACACCGGAGCCGCAGTCGCAGCCGAAGCCCTGTCAGACTGCAGAGAGAGACTAAAGCGGAGAGCAGCGAACCACGCAGAgctgtgcgCGAGGGGAAGGTGGATAAAGATCCTCTGTCTGATCTGCAGGACATCAGTGACAGTGAGAGGAAGACCAGCTCACCGGGGTCTTCACTGGgtTCAGGTTCAGGATCTGAGGCTGAGGAGGATGAGGACAATGAGGAGGAAGAGTCCAGCAGTCAGACTGAAGGAGATGAAGAGGGCGAGTCGGGGTCTGAGTCTGAGGGCTCCGAACACAGTGGagGAGCACTGAGTGATGAAGAGCCGTccgaagaggaggaggagggggaggaggaagaggagcgaGAGAACGGAAACCACATTCCTCCTGTTCCAGAGTCCCGCTTCGACCACGACTCTGAGGTGAGcgctgaggaagaggaggaggaggaagaggaagtggAGGAGGAAGAAGCAGTAGACGTGACTCCGCAGTCTCACGCACCGTCCGCCACACCTGAGGAACGCTACATCCCCGAGTCCCCACCGGTGTCTCCTGTAGAACTGAAGAAGGAGCTGCCCAAATACCTGCCCGCGCtacagGGCTGCCGCAGTGTGGAGGAGTTCCAGTGCCTGAACCGCATCGAGGAGGGCACGTACGGCGTGGTCTACAGAGCCAAAGACAAGAAGACGGACGAGATCGTGGCTCTCAAGAGGCTGAAGATGGAGAAGGAGAAGGAGGGATTCCCCATCACATCCCTGCGAGAGATCAACACCATCCTGAAGGCCCAGCACCCCAACATCGTCACCGTCAGGGAGATCGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGATGAATTACGTAGAGCATGACCTGAAGAGTCTGATGGAGACCATGAAGCAGCCCTTCCTGCCCGGTGAAGTGAAGACGCTGATGATCCAGCTGCTGCGCGGTGTTCGACATCTGCATGATAACTGGATCCTGCACCGCGACCTGAAGACCTCCAACCTGCTGCTGAGCCACAAGGGCATCTTAAAGATTGGAGACTTTGGTCTGGCCAGAGAGTACGGCTCTCCGCTGAAGCCCTATACACCGGTGGTGGTGACGCTGTGGTATCGCTCCCCGGACCTGTTGCTGGGGGCAAAGGAATACTCCACCGCCGTCGACATGTGGTCAGTGGGCTGTATATTTGGAGAACTGCTCACACAGAAACCCTTATTCCCTGGAAAATCTGAGATCGATCAAATCAACAAAATCTTCAAGGACCTGGGCTCTCCGAGTGAGAAGATCTGGCCGGGTTACAGCGAGCTACCAGCAGTGAAGAAGATGACCTTCACTGAGTATCCCTACAATAACCTGCGCAAGCGCTTCGGTGCGCTGCTGTCCGACCAGGGCTTCGACCTCATGAACAAgttcCTGACGTACTGTCCAGCCAAGCGCATCAGCGCAGACGAGGCTCTGAAACACGAGTACTTCCGCGAGTCTCCGCTGCCCATCGACCCCTCCATGTTCCCCACCTGGCCGGCCAAGAGCGAACAGCAGCGCGTCAAGAGGGGGACGAGCCCCCGAGCACCAGAGGGAGGACAGGACTTCAGCCAgctgGGCGATGATGATCTTAAAGACACAGGTTTCCACCTGACCACAGCCAATAAGGGCGCCTCGATGGCCGGTCCAGGGTTCAGCCTCAAGTTCTGAGCTTTGCTGGATTATTCTGACGCTCGCTGAGACTCATTCATAGAGGACGAGCggcagcatcacacacacacacacacacagactctgcagcagcgtgtgtgtgtgtgtttacaggagCTCTGCGATTCTCTCGCTGCTCTGTTTTGCTAGATGCTTCTTCGTTTGTCCTGAAATATGCAGCAGATCACAGCGTTCCAGCAGCGAAGctcttttatattgtttatttctcTCCGTCTACAGTTTTATTTAGGAGTAGGGTGATCTTAAACCTGTCTGTGGAGACGTGTGCATCTCAATAAAACACGTATTCTGAAAACGACATTCGGATTGGCTGGAAGGTAAGCTGTGTGTTGAAGAAGTGCACATGACGGTATTATTAGCGCTGTCTTCATTACAGCAGACGCAGCGTATTCCTGATTCCTGCGCTCCAAGATGTATTCTTCTTTAGTTTCTCTTGAGCCTCAGCTGAAGACACTGTTTTCCTCCTCAGACAGCTTCGCTCTGTGCtgttattttaatcaaataaagcgAGATGTTTAGTGTT

Function

symbol description
cdk11b Predicted to enable cyclin-dependent protein serine/threonine kinase activity. Acts upstream of or within smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to human CDK11B (cyclin dependent kinase 11B).

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-74 Predicted to enable cyclin-dependent protein serine/threonine kinase activity. Acts upstream of or within smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to human CDK11B (cyclin dependent kinase 11B).

Ensembl:

ensembl_id ENSDARG00000102546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071884 True 3007 mRNA 0.54 19 53948194 53960349

Neighbor

gene id symbol gene type direction distance location
XLOC_036826 ubiad1 coding downstream 21966 53918234 ~ 53926228 (-)
XLOC_036825 mib2 coding downstream 51212 53862745 ~ 53896982 (-)
XLOC_036824 CABZ01090219.1 coding downstream 96609 53841302 ~ 53851585 (-)
XLOC_036823 BSN coding downstream 144765 53794022 ~ 53803429 (-)
XLOC_036822 NA coding downstream 166342 53781481 ~ 53781852 (-)
XLOC_036828 SLC35E2B coding upstream 18899 53979248 ~ 53991184 (-)
XLOC_036829 NA coding upstream 101348 54061697 ~ 54068296 (-)
XLOC_036830 NA coding upstream 109812 54070161 ~ 54075099 (-)
XLOC_036831 rho coding upstream 115846 54076195 ~ 54077740 (-)
XLOC_036832 NA coding upstream 151680 54112029 ~ 54113768 (-)
XLOC_036813 NA non-coding downstream 480491 53464218 ~ 53467703 (-)
XLOC_036812 CU914536.1 non-coding downstream 591298 53356779 ~ 53356896 (-)
XLOC_036807 NA non-coding downstream 1012724 52933059 ~ 52935470 (-)
XLOC_036833 NA non-coding upstream 206704 54167053 ~ 54168171 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00770066_00782851 CDK11A, CDK11B coding CI01000050 null 770066 ~ 782972 (+)
bowfin (Amia calva) AMCG00002243 NA coding CM030136.1 CM030136.1 8921914 ~ 8933126 (+)