XLOC_036830


Basic Information

Item Value
gene id XLOC_036830
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54070161 ~ 54075099 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072570
ACACACTGGTGAATTTGTATGGAAAACtttatttgataataaaaatagcattcaCAGACTTCTTTTTGATAGCTACATATACATCGTGATCCATCCAAACGGgaagaagagaaaaaaacttTACTGTGTGAGTCCACGTCTACTGAGACTAATGTTAAAACTTCATGAGTCAAATAAAGCTATGGACAATGCagaatttgtatatttatatatatatatttatatatttatatgcatagttttgtaaaaagaaaaaaaaacattagaccATATACATGTACAGCTTTATCGACAGAAAAAGCATTTAAAATCCATATAACTTTGCAGAGACCACAGACAGTGTACAAGATCTGTAGGAAAAAAGCAGGCGATCATCACGACAGATATTCCTGGAAAACCGTCATTCAAGCAAACGCTCCTGTGTGCCCAACGTCTTCCACAATAAACATCTTCTTCAGGTGGATTTGTACAGAGAAAGGCAACAGTTTCCTTACCTACACAGCTTTAAAGTACATACAGTAATAAAAACCTGTACAAAAGACAGTGGCTGATACGTTCATGTGATACAGTACTATTCAGATGGAGGAATTCCCTGCTCCCGCTCCTGGTCAGTACCGAAACTCTTGTGTTCCTGGTCAAACACGTGTTGCGGATGGAGGACACGGGTGGCTCAGTTTGGCAGATCTCGCCTGGAGTCTTTCAGATCAAACCTGAAGCTTCAGTGCAGAAACTGTACATTCAGGCCAGAATCCACAGATTGGTCCTATCCTGCCTTTGGTAGTCTACTTGTGGAGGTAAAGGTGGCTGCTGTGTCAGGGACAGAGCTCAGATTAAAATCAATGTGAATTAAAAAGGGCCGCAAAAGAATATGCAGGGACTAAAAGCAGACGGCTTTCTCTCGTTTGACATATATCCAGTGTTTCTGTGTTGCTGAAGCTCGACTGGAGCTCGCACATAGTGATAAAATATACAGCTTCAGTGCACTTTAAGCCACTTTTTAAAAGCACCTGATTCCTTCAGAAAATAGACATTTTGTAATAATTCGCTTTAAGCTAGCTTTGTGTCGAGTTTTCTCAACTGTGCACATGTGCCTTTAGTTTCATTTCAGGTGGTTatggtcaaaaataaagtctacatcaacaacaacaacaaaagaaaaaattgtGCCACAGGATACCCTTCTGTTGTCATCTTTGcgctttgtttgtgtgtttttttgcttGTGGGCGGCTCGTGCCTCAGTCCAGTGCAGGCTTCAGACAACCACAGTCAGATATCGACTAAGAGCAAAGATGCTTTCTCAAACGTCACATTTCAAttagtcaaaataaataaacagcttaaATACATCACTAAATTAAACAGTAGCATCAGAGTTCAGTTTCTATTAAATTGTACAAACAAGGAACTAAAAGTTAAACGCTTGTGCTCTGGTTCAGTCGGTCTGAATTGGGAGAAAACAAGAGGACACAAAGAGAACGCAACATTCTGGAACGGAATCATCTGCATCTTTTAACTGAACATGGCTCTTTGACACAGGATGTGGAAGCAGTGTGAGGGATGAGGGACGGTCCGCGCTGGTCAGGTCAGATGCTGAGGTCTGCGTGGTTCTCCTTGTACAGGCGTCTCTTTGCCGGAGAGTTCTGTCCTCGGCCCGCTACGCTGGCGGCTCTCAGAGCGTTATAATAATCTCTCAGCTGTGGAGTCGCTGCCTCCTCCAGGAAGCTGCCGTCGCTGCTGCTGTCCGACTTCCTGTGCAGCAGTGTGTCTGCCCCACTACTGAGGTGTGTCTTCGGAGAGCTGTTCAGCAGAGCGTTCCTGTTCTTCAGCCCGCGGTCAGGAGTGCGGCCCAGGGTGCTGGAGGTGAAGCCGTTCCTACCGGGGGTCTTGGGCTCTTTCTGCATCGGGACGCTCCTCTGAGGGGTGGAGGTCCAACCAAGCGGTTCCTGTGGGCCCCGATCTGGAGACGACTCCTTGTAGGAGCGGCTGGTGCGACGGTCCACAGACTTGGCCCGGCGGCGCTCTGGGGAAGGGTTGCGCTTTCGGCCGGAGGAGCGGTCCAGGGACCCGCTGCGCACCTGAGAGCCTGAGCTGCTCTGGGGGTCTGTGGACGGTTTGCGGCCTCGCCTCTGCAGGTCCTGGTTGGAGGTTTTCCTCCCGAATCCGCCCTCCTTCCTCAGGGTCTTGAAGAGCTTGGCGATGCCGCTCTCTGACTCTGACTTCTTGACCTTGGAGCGGTCCGGGGATGGTGACGGGCTGGGGTGGTTGTTCCAGGGCTGGTGGTGTGGAGCGCTGGGGAACAGGCCGGGGCCCAGGGCCTTCTCTGGGTCTCTGTGGTGTAGCTGGCGCTGCTTGGGCTGGGGTGGGGAGTGATATTCAGATGTGTAGCTGGACTCGGACGGATGATAAAAGGGGCCACTTGCCAGTAAGGGCCTCACTTCCGAATTATTTTGTGGCCTGGGTGAGGGAGGGTAGCTGTCATTTGGGCCGTCTGGAGATCAAAAGAAAAAGAGATTAGATTTAAAGCACCCGACACCACGTCACATCAAACTGACAGCACATACAAGCAGAAAAATCACGCAACAACATCTACACGAACAGTCAAAGGTGTGGACAAGGGAACTCATTTTATATGGTCTATAAGTCATGCAAACCAGGACTAAGCCTGTTCCTGAGAGTTCGGCTTAAGCACATCTGCGCAGATGTTTCTGGATACCGTAATTCACCTGCTCAGGTGGGTTTAAACAGGGCAGAtgataaactctgcaggacaggtCTGGACTCACCTGGTCTACATGACTGAATTACACAGATGGTAGTATGGAAATTAAATGGTGACCAAAAGTGCTAAACAAAGCAACACTAGCATTTATTTAGGGTGAGACTGAGCAAAGCTGGAGCTCCTGAGAGGGGAAATGGGACAGAACAGAAATGAAGGCATCAGCAGCAGAGCACACTTCTCGACGTGTTGTTTGGGAATATCTGAAGTCATCATGTTTAACTCTTTCTGATGCAGAAGGTTTGTCTGATCAGTTTAATAGTTGCCTATGCACAAAAGGTCAGCAAGGGTGTTATGGTGCCTGTTAAAGTGTTAAAACAGTTTGGTGGATCAAGTGTTTTTAGAATGAACCCAGAAACACCTAATCGTAATCTCTCAGAACAGGCTCTGCTTCTCTGACGACACGACTGTGCGATGGCGAACACACCACAGGATAACTCTGATGGAGAAACACACTCTACTGCTCAGCACTGTGAGGACATCAGCAGATTTCTAGATTTAACAGCACTGCACTGACCAACTATCATCAGGCATGGTAAAAATGGTAAAATGTGGCATGTCCAGACTGACATGACGAGGTGCTCTTCCACCATTATATATCAGATCAGCAGAACTAACAGCTCAGGATCCGCTTGAGGATGAGGAGCATTATCTAGACCCAGAGGAGATGGGGAGACCCTCCACAGACCAGAAGAGCCGACTCACACACGTCTCTCACGGTGAGCACTCATACAGGTACTTAAACTCAATCACAGGACTCTCCTGCGGGGTTTAAGCCTGAATCTATGCTAGCAGAAggacagcagaagaccacactgtgAACCGCAGGAACATCAGTGCGTCTGCTTGCTTTACTCCTCAACATGACGGATACTATCAACAGAATATTATCTGATCTCAAGATCCCGATCACAAAACAGGATGGACCAAACTGAGAAAGCTAGATGAGGAAAACAACATAACATTATGGAGGGGTGTGGAAATAGTCTTCTCTCATACATTTTTTCCCAAATCCCGCTTACAAAATCACACTTCAGTATGTGTTACAAGTGAACCGCACAAACCTTTCTACATGGATATTAAACATGCCAACACATTTCAACAAtcaacagaaaaataataaactatactTGTTTAGGTGTGTACATCATAACCTGTAGTCTAAGACCTTTTAACATCAGATATAAACGGTGCATGTTTCCAAACTGGACATTGATGATGATGAAATATGTCAcgaaaacaaaatataaactgCCAAACACTGGCCTCAAACAGCCTGACCCATCAGCCAATCCCGTCTTTAATCGACTAAAACAGCTAAAACAAGGATCAACGTGATGATCAGGgaaagtctaatagacatctaagaacagCCAGTCATCATATGGACAGACTCATGCATGGTCATTCAGTCCTGTGCACTTGGGGACAGGTCTAGTTTTGGGCTTTTCTAAtccgtctattagattttcagcCTTTACGTCTGTTTTTAGGCACTTATTGACGACCTTTCAACAAAAAGGATTGCTGGGTAGTTTTCTTCATGCAAAATGTGGATTTTTGCCATGTGACGCAGATGGTTTTTGTGATATTGGCCCATGCGTGTGATCAGACAGACAGGAATATGTCAGCAGGGTCACGCATGCATCTGAGCGTCTTCATGACAGACAGTAATGCATGCCTGACAGCGGGAGATGGAGCGTGGATGGGGATCTGCTGAGGGCCTGAGCATCACTGGGTGACGGAGGAGAACACAGAGCGTGCTTTACAAACCGTGGCTTGGTTTTGACCCATAAGGTAGAAGCACGGCTCGCCCAGCTTATCGTTCCTCAGACAGGCAGCGAGATGAGGAGCCATCATGGCTAAGGAGAGCGCAGATCCGCAAGAGAAAAACAGACAGATCAAGCAAACATGTCTCTCTGCAGGGCATGGAGAACAGCAGAACTGACGCAGATTCTCCAGGATGACAGCAGGACAGAAGAAGAGCTGCGGGACTCACCGTACTCCGGCACGGACCCGTCTCCTCGCTTCAGCACCAGCCTCGCCCAGCGGCCGCCCGTCTTGATCAGCTCGATGGCTCGAGAATGCTTCATGTTCTTTGTGCTTTCTCCATTAATCTCCAGAATTTCATCTCCAACCTGTAAAGAAGGGGAAGACACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072570 True 4939 lncRNA 0.47 1 54070161 54075099

Neighbor

gene id symbol gene type direction distance location
XLOC_036829 NA coding downstream 1865 54061697 ~ 54068296 (-)
XLOC_036828 SLC35E2B coding downstream 78977 53979248 ~ 53991184 (-)
XLOC_036827 cdk11b coding downstream 109812 53948194 ~ 53960349 (-)
XLOC_036826 ubiad1 coding downstream 143933 53918234 ~ 53926228 (-)
XLOC_036825 mib2 coding downstream 173179 53862745 ~ 53896982 (-)
XLOC_036831 rho coding upstream 1096 54076195 ~ 54077740 (-)
XLOC_036832 NA coding upstream 36930 54112029 ~ 54113768 (-)
XLOC_036833 NA coding upstream 91954 54167053 ~ 54168171 (-)
XLOC_036834 mbd4 coding upstream 136762 54211861 ~ 54216600 (-)
XLOC_036835 trh coding upstream 145452 54220551 ~ 54223316 (-)
XLOC_036824 CABZ01090219.1 non-coding downstream 218576 53841302 ~ 53851585 (-)
XLOC_036822 NA non-coding downstream 288309 53781481 ~ 53781852 (-)
XLOC_036813 NA non-coding downstream 602458 53464218 ~ 53467703 (-)
XLOC_036812 CU914536.1 non-coding downstream 713265 53356779 ~ 53356896 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110491133 LOC106566645 misc NC_048580.1 CM023234.2 60139129 ~ 60343362 (-)