XLOC_036832


Basic Information

Item Value
gene id XLOC_036832
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54112029 ~ 54113768 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072093
actgtatgatttgtttatgggtaaaacaaagaccatgcaggtcaggtagtttaaacggtaggctacaaataattaattggtcattaattattcataatcgaaaatcgaatcgaatcatgcctttagaatcgaaaatgtaatcgaatcgaggatttggaggatcgtgacacccttacaaaGTACACATCTAAACACTGTCATCACAGATAACCTGATATATTCAGGGTGTGTATTCAGAACTCTTTCAGTAAAGTGTTGTGTACGGTTTTTGCTGGAGATGTAAATGGTTTGTTTTTCACGCTCAGGAGGGGATCGTGGAGCGATTGTTTAAGTGGGCTCGAGAGGCCGATCAGCCGCTCAGGATTTACGCCACAGGTCTGCTGGCCGGAGCCATGGAGAACCAGGACATCGCAGCAAACTACAGAGAGGAGAACTCGGTACTGGTCCCTCTGATGCTGCAGAGGCTGCGGGAGCTCCAGGATAAAGACACTGAGAGCCGGAAGGACAGTAAACGGCTGAGCAGGAGCCCGGCTCCTCTGCTGCCGCTGGATGAGGAGGCTGTGGACGGAGAGTTCACTGCGAGCGCTCCTGTGGAGAAGCAGGACTGTGAAGCGGAGCTGCAGCCGCTTAGGTGCGCAGGCCGGGGCGCTGTGGGGCTCAAGGGTCTGATGAAGCCGGCCGCAGCCCCGCTGGAGGAGCCCGAGGGCCCCGCGGACACTCTGAGAAGCTGGAGGAAGAGGGAGAGCGCTGGGAAGCTGAAGCAGAAGCTGAACTTCTCCATGCCGGAGCCGGAGCGCAGCCTGAGCGAGCTCTCCAACAGCAGCTGGACGGAGATGAGCCCCTGGGTGATCGGGAACAACTACAGCCTGGAGCCGCTCACGCCGGGCACAGAGCAGCGGCTCATCCTGATGTACCTCACACCGCTGGGGGAATACCaggaggtacacacacacacacacacacacacacacacacacacacaaacacacaccacacacacacacttactcactgCGCTGTGTGTTTAAACTCTGATGGTTTTCCTCATTTCATTCTCAAAGTAATGGattatgaaaatgtgtgtgtttgtgtgtgtgtttttgtgtgtttttttggtttgtgtttggtttgtgtgtatgtgtgtgtgtttgtgcgtgtgtttgtgcgtgtgtttgtttgtgcgtgtctttgtttgtttgtgtgtgtgtttgtttgtttgtttgtgcgtgtttgtttgtttgtgcgtgtgtttgtgtgtttgtgcgtgtgtttgtttgtttgtgcgtttgtttgtgcgtgtgtttgtgcgtgtgtttgtgcgtgtgtttgtgtttgtgtttgtgtgtgtttgtgtgtgtgtgtttgtgtgtgtttgtttgtttgtgtgtgtgtgtttgtttgtgtgtgtatttgtttgtgtttgtgtgtttgtgtttgtttgtttgtatgtgtgtttgtgtgtgtgtgtttgtttgtttgtttgtgtgtgtgtttgtgtgtgtgtgtgtttgtttgtttgtgtgtgtgtg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0018393 internal peptidyl-lysine acetylation biological_process
GO:0018394 peptidyl-lysine acetylation biological_process
GO:0006325 chromatin organization biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0006473 protein acetylation biological_process
GO:0006475 internal protein amino acid acetylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0016573 histone acetylation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0031248 protein acetyltransferase complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0000123 histone acetyltransferase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902493 acetyltransferase complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072093 True 1529 lncRNA 0.49 2 54112029 54113768

Neighbor

gene id symbol gene type direction distance location
XLOC_036831 rho coding downstream 34289 54076195 ~ 54077740 (-)
XLOC_036830 NA coding downstream 36930 54070161 ~ 54075099 (-)
XLOC_036829 NA coding downstream 43733 54061697 ~ 54068296 (-)
XLOC_036828 SLC35E2B coding downstream 120845 53979248 ~ 53991184 (-)
XLOC_036827 cdk11b coding downstream 151680 53948194 ~ 53960349 (-)
XLOC_036833 NA coding upstream 53285 54167053 ~ 54168171 (-)
XLOC_036834 mbd4 coding upstream 98093 54211861 ~ 54216600 (-)
XLOC_036835 trh coding upstream 106783 54220551 ~ 54223316 (-)
XLOC_036836 exorh coding upstream 188932 54302700 ~ 54304381 (-)
XLOC_036824 CABZ01090219.1 non-coding downstream 260444 53841302 ~ 53851585 (-)
XLOC_036822 NA non-coding downstream 330177 53781481 ~ 53781852 (-)
XLOC_036813 NA non-coding downstream 644326 53464218 ~ 53467703 (-)

Expression


Co-expression Network