G1757077


Basic Information

Item Value
gene id G1757077
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 57919944 ~ 58276546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2011877
gggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagcgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcatagtggttagagcgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagagtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagcggaggggcggcaggtagcctagtggttagagcgtaggggaggcaggtagcctagtggttagagcg
>TU2011881
aggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtagagggagcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagcgtaggggaggcaggtagcctagtggttagagcg
>TU2011876
gggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagcgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagcgtaggggcggcaggtagcctagtggttagagcgtaggggcggcaggtagcctagtggttagagcgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtggaggggcggttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccac
>TU2011882
gcctagaggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcgacaggtagcctagtggttagagtgtaggggcggcaggtagccaagtggttagagtgtaggggctgcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtggaggggcggcaggtagcctagtggttagagtgtaggggcggtaggtagcctagtggttagagtgtaggggcggtaggtagcctagtggttagagcgtagaggtggcgggtagcctagtggttagagagtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2011877 False 541 lncRNA 0.61 5 57919944 58220192
TU2011881 False 255 lncRNA 0.60 2 57919944 57920262
TU2011876 False 537 lncRNA 0.57 4 58090126 58220192
TU2011882 True 688 lncRNA 0.59 4 58125151 58276546

Neighbor

gene id symbol gene type direction distance location
zmp:0000000660 arap2 coding downstream 383160 57279508 ~ 57536784 (-)
LOC118942954 NA coding downstream 1627269 56291672 ~ 56292747 (-)
LOC118942811 NA coding downstream 1688902 56230477 ~ 56231042 (-)
LOC118942810 NA coding downstream 1819073 56100143 ~ 56100871 (-)
LOC118942809 NA coding downstream 2264871 55654018 ~ 55655073 (-)
LOC118942958 NA coding upstream 95604 58372150 ~ 58378475 (-)
LOC110500784 ing2 coding upstream 164621 58441167 ~ 58443946 (-)
LOC110500779 LOC106608532 coding upstream 222713 58499259 ~ 58508480 (-)
LOC110500778 LOC106608531 coding upstream 232030 58508576 ~ 58512400 (-)
LOC110500776 glu2b coding upstream 684715 58961261 ~ 59280662 (-)
G1757067 NA non-coding downstream 20018 57899372 ~ 57899926 (-)
G1757040 NA non-coding downstream 48844 57868308 ~ 57871100 (-)
G1756747 NA non-coding downstream 63225 57854787 ~ 57856719 (-)
G1756743 NA non-coding downstream 76154 57842046 ~ 57843790 (-)
G1756656 NA non-coding downstream 161879 57757756 ~ 57758065 (-)
G1757235 NA non-coding upstream 16439 58292985 ~ 58293391 (-)
G1757246 NA non-coding upstream 44928 58321474 ~ 58322027 (-)
G1757249 NA non-coding upstream 47170 58323716 ~ 58327952 (-)
G1757279 NA non-coding upstream 115146 58391692 ~ 58392526 (-)
G1757378 NA non-coding upstream 133407 58409953 ~ 58411684 (-)
G1757074 NA other downstream 10810 57908139 ~ 57909134 (-)
G1757073 NA other downstream 17351 57902086 ~ 57902593 (-)
G1755322 NA other downstream 1512626 56406582 ~ 56407318 (-)
G1755310 NA other downstream 1529378 56390057 ~ 56390566 (-)
G1754243 NA other downstream 2645995 55272218 ~ 55273949 (-)
G1757692 NA other upstream 523628 58800174 ~ 58805825 (-)
G1758095 NA other upstream 915886 59192432 ~ 59195490 (-)
G1758845 NA other upstream 1747221 60023767 ~ 60024903 (-)
G1758890 NA other upstream 1845996 60122542 ~ 60123364 (-)
G1758915 NA other upstream 1911864 60188410 ~ 60225587 (-)

Expression


Co-expression Network