G1757249


Basic Information

Item Value
gene id G1757249
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58323716 ~ 58327952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2012103
aactgtgactatagtccatggcaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatagcaaaccctttaactgtgactatagtccatagcaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatggaaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtc
>TU2012104
cctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggaaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtc
>TU2012105
cctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggaaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtc
>TU2012106
cctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggcaaaccctttaactgtgactatagtccatggaaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtccatgacaaaccctttaactgtgactatagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2012103 False 915 lncRNA 0.39 2 58323716 58325219
TU2012104 False 393 lncRNA 0.40 3 58323716 58327952
TU2012105 False 331 lncRNA 0.39 2 58323716 58327952
TU2012106 True 331 lncRNA 0.39 2 58323716 58326154

Neighbor

gene id symbol gene type direction distance location
LOC118942959 NA coding downstream 125466 58195260 ~ 58198250 (-)
LOC110500946 fbxo24 coding downstream 255383 58056547 ~ 58068333 (-)
LOC110500947 zmynd15 coding downstream 267633 58053125 ~ 58056083 (-)
LOC110500948 zmynd15 coding downstream 270732 58043656 ~ 58052984 (-)
paqr9 paqr9 coding downstream 283353 58036498 ~ 58040363 (-)
LOC118942958 NA coding upstream 44198 58372150 ~ 58378475 (-)
LOC110500784 ing2 coding upstream 113215 58441167 ~ 58443946 (-)
LOC110500779 LOC106608532 coding upstream 171307 58499259 ~ 58508480 (-)
LOC110500778 LOC106608531 coding upstream 180624 58508576 ~ 58512400 (-)
LOC110500776 glu2b coding upstream 633309 58961261 ~ 59280662 (-)
G1757246 NA non-coding downstream 1689 58321474 ~ 58322027 (-)
G1757235 NA non-coding downstream 30325 58292985 ~ 58293391 (-)
G1757217 NA non-coding downstream 69673 58250689 ~ 58254043 (-)
G1757139 NA non-coding downstream 143261 58179911 ~ 58180455 (-)
G1757169 NA non-coding downstream 212690 58110315 ~ 58111026 (-)
G1757279 NA non-coding upstream 63740 58391692 ~ 58392526 (-)
G1757378 NA non-coding upstream 82001 58409953 ~ 58411684 (-)
G1757386 LOC106608527 non-coding upstream 87983 58415935 ~ 58416155 (-)
G1757391 LOC106608527 non-coding upstream 96953 58424905 ~ 58425222 (-)
G1757421 NA non-coding upstream 149951 58477903 ~ 58478581 (-)
G1757130 NA other downstream 280659 58042650 ~ 58043057 (-)
G1757074 NA other downstream 414582 57908139 ~ 57909134 (-)
G1757073 NA other downstream 421123 57902086 ~ 57902593 (-)
G1755322 NA other downstream 1916398 56406582 ~ 56407318 (-)
G1755310 NA other downstream 1933150 56390057 ~ 56390566 (-)
G1757692 NA other upstream 472222 58800174 ~ 58805825 (-)
G1758095 NA other upstream 864480 59192432 ~ 59195490 (-)
G1758845 NA other upstream 1695815 60023767 ~ 60024903 (-)
G1758890 NA other upstream 1794590 60122542 ~ 60123364 (-)
G1758915 NA other upstream 1860458 60188410 ~ 60225587 (-)

Expression


Co-expression Network