XLOC_003684


Basic Information

Item Value
gene id XLOC_003684
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41933100 ~ 41934619 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008683
gcctggtttaagctggacatagctggttttggctggactcccagcttggctaggctggtcaagctggttttagctggtcatctcccagcctggacattcaaaatataacattatttaacttaatagGAACGTTAAGGGAActtatttaaaacctaaaatTGTTGGCTGGGATGTTGGTCCACATTTAAAAACTGGGAATCGTTTCTGTAAGAATGAGTTGGTGAATATAGTTGCGTTTGAGTTTAAACATTTGGAAACTGGATGAGTAGGTGATGCTTTCATCatgtttctttgtgtttttaccattttaaaaaaagcacaaatcGCCACCAAAAGTATTGTGGAGGTCATTAACCGTGAACTACTGTATTATAAGGCCAAACTATAATGTATTTATGAACACAACCATGCACACAACTGAGCTTGTGTATTACTGTATGTGTTCATAGAGTATATTTGAAGCCAAACTATGTCTTtgaggggtagttcacccaaagattcAAGTTTACTCACCTACTGACCATCCATATGTTAGTATAACACCAAGAGCTACTGGTTTTAATTTTATGTTGCCTCTATGTTTTCTTTTAACTCTCAAAGTTTGActtatgaatcaccaagaaccGCAGTTTCAGCTAAACAACATTAATAATCTACTGATGAAAAAACATCAGCTACATTTCAGTAAgtaaaataaaat

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0150063 visual system development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008683 True 700 lncRNA 0.36 2 41933100 41934619

Neighbor

gene id symbol gene type direction distance location
XLOC_003683 iffo2b coding upstream 3594 41858807 ~ 41929506 (+)
XLOC_003682 akr7a3 coding upstream 83014 41838036 ~ 41850086 (+)
XLOC_003681 kcnab2a coding upstream 233196 41540862 ~ 41699904 (+)
XLOC_003679 park7 coding upstream 457105 41459408 ~ 41475995 (+)
XLOC_003680 BX571706.1 coding upstream 467864 41465107 ~ 41465236 (+)
XLOC_003685 aldh4a1 coding downstream 1816 41936435 ~ 41960276 (+)
XLOC_003686 her15.1 coding downstream 47340 41981959 ~ 41984487 (+)
XLOC_003687 NA coding downstream 79384 42014003 ~ 42018127 (+)
XLOC_003688 NA coding downstream 101168 42035787 ~ 42036989 (+)
XLOC_003689 NA coding downstream 107940 42042559 ~ 42069664 (+)
XLOC_003369 CR854846.2 misc upstream 25810018 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 29221104 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 29238837 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 29247501 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 29253072 12679732 ~ 12680028 (+)
XLOC_003677 CABZ01087025.1 non-coding upstream 698010 41223485 ~ 41235090 (+)
XLOC_003676 CABZ01087025.2 non-coding upstream 731828 41192329 ~ 41201272 (+)
XLOC_003671 NA non-coding upstream 976977 40891681 ~ 40956123 (+)
XLOC_003690 NA non-coding downstream 118632 42053251 ~ 42054601 (+)
XLOC_003691 NA non-coding downstream 163428 42098047 ~ 42098291 (+)
XLOC_003672 CABZ01044764.1 non-coding upstream 1033211 40897326 ~ 40899889 (+)

Expression


Co-expression Network