G1758317


Basic Information

Item Value
gene id G1758317
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59429126 ~ 59430757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2013326
CAACTGCTGGTTCGACTGTGAAATGTGACGCTGGGaggaagaaaaaagaaaaaagaagtgTTTAGAATTGTACAGAAGTCTTCAAAACCATTTGAGAATACTCCAGTGAAAGGAGAAAAGAAGCAGCCGTTGTGTGAATACACTGATCATCTTGGTTTAAAACCCCTCATTGCTGACTTTAAGGTCCATTCATGTCTCATGATGCTGTGTGATCATTGACAGATAGTAGTGTTGGACGACGTGCCAGCCTTTCTGAAATACATCTGGCGCTGTGGTTTGTTTTGTCATgctgtgtctatgtgcttattcTGTCACCTGCACTtagtctctctcactcacatacTATAATTAACCACATCTAtcttaacaccccccccccccccctccttctctccctcactatccCTTTTTCACTCATGCACTCACTAACTACTGGCGTTATAATGACACTCAGTGGCACCAACCACCAtcttagtctctctctcattcaactaCCAACCATCACTTTAGTCTCTCTCATTCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACCATCATCTTAGTATCTCTCTCATTCAACTACCAACCGTCACtttagtctctctctcattcaactaCCAACCAtcatcttattctctctctcattcaactaCCAACCATCAtcttagtctctctctcattcaactaCCAACCATCAtcttagtctctctctcattcaactaCCAACCATCATCTTAGTATCTCTCTCATTCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACCATCATCTTAGTATCTCTCTCATTCAACTACCAACCATCGCcttagtctctctctcattcaactaCCAACCATCatctttgtatctctctcattCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACAAtcatctttgtctctctctctcgatccaactcccctccttcctctctctccattttctctATAACCCATCCCTCCCCATATCCCAGCAGGCCAGCTCTCTATTGGCGTATATCATAATGTGAAGCATGACCCTGAGATGACCCTGAGTGTTTAACAGATGACCCTGAGTGTTTAACAGATGACTCTCAGCATTTAGCAGATGACCCTGAGATGACCCTCAGCATTTAACAGATGACCCTCAGCATTTAGCAGATGACCCTGAGATGACCCTCAGCATTTAACAGATGACCCTGAGATGACCCTCAGCGTTTAGCAGATGACCCTCAG
>TU2013327
CAACTGCTGGTTCGACTGTGAAATGTGACGCTGGGaggaagaaaaaagaaaaaagaagtgTTTAGAATTGTACAGAAGTCTTCAAAACCATTTGAGAATACTCCAGTGAAAGGAGAAAAGAAGCAGCCGTTGTGTGAATACACTGATCATCTTGGTTTAAAACCCCTCATTGCTGACTTTAAGGTCCATTCATGTCTCATGATGCTGTGTGATCATTGACAGATAGTAGTGTTGGACGACGTGCCAGCCTTTCTGAAATACATCTGGCGCTGTGGTTTGTTTTGTCATgctgtgtctatgtgcttattcTGTCACCTGCACTtagtctctctcactcacatacTATAATTAACCACATCTAtcttaacaccccccccccccccctccttctctccctcactatccCTTTTTCACTCATGCACTCACTAACTACTGGCGTTATAATGACACTCAGTGGCACCAACCACCAtcttagtctctctctcattcaactaCCAACCATCACTTTAGTCTCTCTCATTCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACCATCATCTTAGTATCTCTCTCATTCAACTACCAACCGTCACtttagtctctctctcattcaactaCCAACCAtcatcttattctctctctcattcaactaCCAACCATCAtcttagtctctctctcattcaactaCCAACCATCAtcttagtctctctctcattcaactaCCAACCATCATCTTAGTATCTCTCTCATTCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACCATCATCTTAGTATCTCTCTCATTCAACTACCAACCATCGCcttagtctctctctcattcaactaCCAACCATCatctttgtatctctctcattCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACCATCatctttgtatctctctcattCAACTACCAACCATCAtcttagtctctctctcattcaactaCCAACAAtcatctttgtctctctctctcgatccaactcccctccttcctctctctccattttctctATAACCCATCCCTCCCCATATCCCAGCAGGCCAGCTCTCTATTGGCGTATATCATAATGTGAAGCATGACCCTGAGATGACCCTGAGTGTTTAACAGATGACCCTGAGTGTTTAACAGATGACTCTCAGCATTTAGCAGATGACCCTGAGATGACCCTCAGCATTTAACAGATGACCCTCAGCATTTAGCAGATGACCCTGAGATGACCCTCAGCATTTAACAGATGACCCTGAGATGACCCTCAGCGTTTAGCAGATGACCCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2013326 False 1280 lncRNA 0.43 3 59429126 59430757
TU2013327 True 1350 lncRNA 0.43 3 59429126 59430757

Neighbor

gene id symbol gene type direction distance location
LOC110500775 dmrta1 coding downstream 145001 59282169 ~ 59284125 (-)
LOC110500776 glu2b coding downstream 148464 58961261 ~ 59280662 (-)
LOC110500778 LOC106608531 coding downstream 916726 58508576 ~ 58512400 (-)
LOC110500779 LOC106608532 coding downstream 920646 58499259 ~ 58508480 (-)
LOC110500784 ing2 coding downstream 985180 58441167 ~ 58443946 (-)
dctn6 LOC106608510 coding upstream 23958 59454715 ~ 59460683 (-)
trnay-gua-65 NA coding upstream 169764 59600521 ~ 59600607 (-)
trnay-gua-66 NA coding upstream 170442 59601199 ~ 59601285 (-)
trnay-gua-67 NA coding upstream 171118 59601875 ~ 59601961 (-)
trnay-gua-68 NA coding upstream 171796 59602553 ~ 59602639 (-)
G1758314 NA non-coding downstream 4111 59423685 ~ 59425015 (-)
G1758294 NA non-coding downstream 41154 59383531 ~ 59387972 (-)
G1758203 NA non-coding downstream 73928 59354356 ~ 59355198 (-)
G1758201 NA non-coding downstream 74977 59352809 ~ 59354149 (-)
G1758177 NA non-coding downstream 80977 59343822 ~ 59348149 (-)
G1758362 NA non-coding upstream 83857 59514614 ~ 59514862 (-)
G1758364 NA non-coding upstream 85505 59516262 ~ 59533218 (-)
G1758417 NA non-coding upstream 181911 59612668 ~ 59651669 (-)
G1758424 NA non-coding upstream 188471 59619228 ~ 59622300 (-)
G1758428 NA non-coding upstream 203826 59634583 ~ 59637718 (-)
G1758095 NA other downstream 233636 59192432 ~ 59195490 (-)
G1757692 NA other downstream 623301 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1386069 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1519992 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1526533 57902086 ~ 57902593 (-)
G1758845 NA other upstream 593010 60023767 ~ 60024903 (-)
G1758890 NA other upstream 691785 60122542 ~ 60123364 (-)
G1758915 NA other upstream 757653 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 928073 60352810 ~ 60370197 (-)
G1759103 NA other upstream 1097630 60528387 ~ 60528790 (-)

Expression


Co-expression Network