G1758412


Basic Information

Item Value
gene id G1758412
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 59674010 ~ 59685333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2013450
gggcatgtctcagtgccctccgtgattattttttgactgcttctgtcagtttgtacaggtcatgctgattacagaagcgaagcggaagcgtgatgtctactttaaccacgtgtacgatcggtcgaaaccactctctgctatccagttcattttcagcaagtaccccagtggcctaatggataaggcactggccttctaagccagggattgtgggttcgagtcccatctggggtggatgaatgcaaattcctttggaggaagagagatcagcacgtaacACAGAGTtagatggattgaagctttccgattcaatttatagaaatgaagatttaacagggataaaaaaggagaattttgtgggcatgtctctgtgccctgagaaatgcatttttttttacaactgcttctatcagttcgtataggtcatgctgatttaacagggataaaaaaggagaatttcgtgGGCATGTCTATGTGCCCtgagaaatgcaattttttttacaactgcttctatcagttcgtataggtcatgctgatcacacatttccacagtgacttaagacactgaccgcctaatccatttattgtgagttcaagtattgttttggggtacctgaaagtggagggatgaagtggaagtgtgcagggcagttaaccaagtgGTTTAggaatcgaaaccatcctctgctatccaGTTTGCTTTTAGCAATGAAGTGCAAACAGAAGAGAAGAGCTGGGCACATAacacagaggttgatggatcgaagctATCCAATTCTACTTTTAGAAATGAAGtgtaaacagggatttttttttttaaattggagaatttcatgtgcatgtctctgtgccctccgtgattctttttttattactgcttctatcaatccatataggtcatgct
>TU2013448
cGTATAGGTaatgctgatcacacatttccacagtgacttaagacactgaccgcctaatccatttattgtgagttcaagtattgttttggggtacctgaaagtggagggatgaagtggaagtgtgcagggcagttaaccaagtgGTTTAggaatcgaaaccatcctctgctatccaGTTTGCTTTTAGCAATGAAGTGCAAACAGAAGTTAATTTTCAGCAAgtaccccagtggcctaatggataaggcactggccttctaagccagggattgtgggttcgagtcccatctggggtggatgaatgcaaattcctgtggaggaagagagatcagcacgtaacACAGAGTtagatggattgaagctttccgattcaatttatagaaatgaagatttaacagggataaaaaaggagaatttcgtgGGCATGTCTACGTGCCCtgagaaatgcaattttttttacaactgcttctatcagttcgtataggtcatgctgatttaacagggataaaaaaggagaatttcgtgGGCATGTCTATGTGCCCtgagaaatgcaattttttttacaactgcttctatcagttcgtataggtcatgctgatcacacatttccacagtgacttaagacactgaccgcctaatccatttattgtgagttcaagtattgttttggggtacctgaaagtggagggatgaagtggaagtgtgcagggcagttaaccaagtgGTTTAggaatcgaaaccatcctctgctatccaGTTTGCTTTTAGCAATGAAGTGCAAACAGAAGAGAAGAGCTGGGCACATAacacagaggttgatggatcgaagctATCCAATTCTACTTTTAGAAATGAAGtgtaaacagggattttttttttaaatttgagaatttcatgtgcatgtctctgtgccctccatgattcttttttttattactgcttctatcaatccatataggtcatgctgatcacagagagacacagtggcttaagacactgatcTCCTAATCCATGTATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2013450 False 904 lncRNA 0.42 3 59674010 59685333
TU2013448 True 1020 lncRNA 0.41 2 59680897 59682907

Neighbor

gene id symbol gene type direction distance location
trnay-aua-4 NA coding downstream 1132 59672792 ~ 59672878 (-)
trnay-gua-153 NA coding downstream 1809 59672115 ~ 59672201 (-)
trnay-gua-152 NA coding downstream 2486 59671438 ~ 59671524 (-)
trnay-gua-151 NA coding downstream 3163 59670761 ~ 59670847 (-)
trnay-gua-150 NA coding downstream 3839 59670085 ~ 59670171 (-)
trnar-ucu-93 NA coding upstream 770 59686103 ~ 59686175 (-)
trnar-ucu-94 NA coding upstream 1773 59687106 ~ 59687178 (-)
trnar-ucu-95 NA coding upstream 2776 59688109 ~ 59688181 (-)
trnar-ucu-96 NA coding upstream 3774 59689107 ~ 59689179 (-)
trnar-ucu-97 NA coding upstream 4777 59690110 ~ 59690182 (-)
G1758417 NA non-coding downstream 22341 59612668 ~ 59651669 (-)
G1758428 NA non-coding downstream 36292 59634583 ~ 59637718 (-)
G1758424 NA non-coding downstream 51710 59619228 ~ 59622300 (-)
G1758364 NA non-coding downstream 140792 59516262 ~ 59533218 (-)
G1758362 NA non-coding downstream 159148 59514614 ~ 59514862 (-)
G1758445 NA non-coding upstream 13961 59699294 ~ 59704011 (-)
trnar-ucu-120 NA non-coding upstream 51808 59737141 ~ 59737451 (-)
G1758587 NA non-coding upstream 176624 59861957 ~ 59862860 (-)
G1758592 NA non-coding upstream 195994 59881327 ~ 59881710 (-)
G1758594 NA non-coding upstream 199935 59885268 ~ 59885664 (-)
G1758095 NA other downstream 478520 59192432 ~ 59195490 (-)
G1757692 NA other downstream 868185 58800174 ~ 58805825 (-)
G1757130 NA other downstream 1630953 58042650 ~ 58043057 (-)
G1757074 NA other downstream 1764876 57908139 ~ 57909134 (-)
G1757073 NA other downstream 1771417 57902086 ~ 57902593 (-)
G1758845 NA other upstream 338434 60023767 ~ 60024903 (-)
G1758890 NA other upstream 437209 60122542 ~ 60123364 (-)
G1758915 NA other upstream 503077 60188410 ~ 60225587 (-)
LOC118942962 LOC106608456 other upstream 673497 60352810 ~ 60370197 (-)
G1759103 NA other upstream 843054 60528387 ~ 60528790 (-)

Expression


Co-expression Network