XLOC_036874


Basic Information

Item Value
gene id XLOC_036874
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1332785 ~ 1334472 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075038
cggtgtcctgcaaagtttagttccaaccccaatcagacactcctgggctagctaatcaagctcttattggCTTTCTAGAACCAGCcgttttgaggcaagttggagctaaaatctacaagACACCAGCCTACTCCTGCTTCAGATGATGTTTAATTGTGGTTTGGTTTAAAGGCTAGAAAACATTAAGATTTCTATAAGGTAAATGATGTAATGCTTTGTAGAAGCTaaaattcaattcattcattcattttcttctgctTTTCCGGGCTCGAGTCGCAGGGTCAGacgtctcaggagagaaccccagacttccctctccccagacactccCTCCAGCCCTCCGGGGGATTCCGAGGCGTTCTCATGCCAGCCGAGACGTTgtaggcgtccaggaagCATTCGACTCAGTtggcttctctcgatgtggaggagcagcggctctactccgagctcctcccgggtaaCAGCTCCTCACTCTGTTCAATTTGATATGAGAAATAAAAGActacacctcactgccagcttGTGGGTATGCCTGAAAGATCTTGTGCAGACTGTACCACTCTCCAGACACCTGAAGGATCTGAAGCGTCCCTGACCATAAATGGCCCTGTCCACATTGATCACCCTCTTTCCTTTCCTGATGGCGTTGCTCTTTCATGTGCAGATCCGTCACACGAATATTTCACAAAAGATAATTCAACATCTCGTGAAAATGTTTCGCCATGTACTTTCTCCTTAATGTAGCCAACCGCGTTGTCCACCAGCCGTTAAACCTTTGGCCATTGTACTTGCCAGAATTTACAATGAGATGGTCAAGCCACCGCACCTCAGATGCCGTTGGCATAATGGGATGACGTCTTTTTTGTTTTGCTAAGACCTAGAGATTGTAATGCTAAAAACGGTCTACAGACTGATTTCACGCAGCTGCCATTTTTGAATGCGAAATCGAGGCTggggtgggaagaaacccggatgTATCGCTTGGAGTTACACAGGAacattgtgtacctggctgtatatcttatcagcgaagagaaagggATGCAAATTTAACATTTCACcaccttccgagtgacccgaaggtccgttctgactaaatgctaaaaataaaaagtgagtCACGAGGCGCGAGCAAAAAGTGCCCCGGTGTGCACCGGCCTTTACTCTGTTGCTGACATTGTTTGTTTCCTCATTCTGATTGTGTTTGCTGGATGTTTACAAATTCTGCCTGTTATTTGTGCCAcgcctgtctgctgcctgcccaTCGACtgattttcaaaagcgaaattgAGTGTGGGAAGAAATctggaagtatcattgggagttacataggaatgttgtgtagctggctgtatatcttatcattgaagagaaagtgacacaaatgtataatttcaccgccttccgagtgacccgaaggtccgttctgaatgaatagttaaaataaaaagggatgtcagagctcattttcagctaggttaaagggtcacgaaacaccagaacacatgtgttgagctgttgacagtcgtatatgtgtccaacactgctaaaaacactataaggacacctatatttcactaaaaagtgtaaattggttgtttttgcgttatttca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075038 True 1617 lncRNA 0.45 2 1332785 1334472
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_036873 FP102120.2 coding upstream 6917 1325704 ~ 1325868 (+)
XLOC_036872 FP102120.3 coding upstream 14690 1317931 ~ 1318095 (+)
XLOC_036870 NA coding upstream 27363 1304365 ~ 1305422 (+)
XLOC_036868 FO818722.1 coding upstream 33992 1251514 ~ 1298793 (+)
XLOC_036869 NA coding upstream 62840 1265545 ~ 1269945 (+)
XLOC_036875 prkra coding downstream 31275 1365747 ~ 1371519 (+)
XLOC_036876 NA coding downstream 34482 1368954 ~ 1369307 (+)
XLOC_036877 FP102120.1 coding downstream 38474 1372946 ~ 1376460 (+)
XLOC_036878 pde11a coding downstream 170734 1505206 ~ 1574386 (+)
XLOC_036879 BX004991.1 coding downstream 240948 1575420 ~ 1580044 (+)
XLOC_036867 NA non-coding upstream 132540 1200041 ~ 1200245 (+)
XLOC_036881 NA non-coding downstream 489847 1824319 ~ 1883661 (+)
XLOC_036882 NA non-coding downstream 590836 1925308 ~ 1926531 (+)

Expression

Expression of XLOC_036874 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network