G1760504


Basic Information

Item Value
gene id G1760504
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 62689513 ~ 62741819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2016359
cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacagacacacacacacaaattgtcCGTTACGTTACCCGGTGATGATGTCGTTATGGTATTCTTCTCATCCACTTCCTCAGATTCCTCAGATTGGCTGGTAGTCGCCTCCGACGACATCGTTTCCATGGCAAACGTTGTCACGTCGTCCAACAAGGTTCCAATATCCCCATCTCCGTTCTGGTCTTGGGATTGGTTGCCATCTCTACCGACGGTGATGTTGTTGGTAAGGTTAGCGTCACGGTTGTCTGGCTGGACCAGGGTAGTAACTGTAGGACTGTTCTGATTGGCTGAGGGGGTATGAGCAGGAGTGGTAGTAAGGGTGGTAGTAAGGGTGGTAGTAAGGGTGGTAGCGGGGATGGGGTCATCCTTGTTGGGCCCTGTTTTTTCGTCTGCTTTGACTATGTGGAGGATCAGAACCACACCCAGGATATAAAGGGGAATGAAGATCGATGCCATGTTGTTGATTTATCAATAGTTCCGTCTGCATCTGAAGGGTTGAGGTAGGTCCGTCACACGTGAAAACAAGAAAGTCTTTTTTCTCTTCTTCAGTGTCTCTCTGACAGGAACTGAGTCACAGACCACAAACAGCTGGGCTGTCTCTCAACCGTGTAAAAGTGACTTCctcccctcgtctcctctccttcctctgcacTGAATCCTCCTGACTCAGAATCAACGTGCTGAAAACAATATATTTTACAGGATGCTTGCAAATGTATGGTTTCATCTGCCCAGTGGGTTCATAAAGGAGAGAAattagaggagaagagaggagatgaaaagaggaaatgaggaaaggagatgaggagatgaagctgcttcagactattgagatgcagccctggTCCTCTGACAGGATGCTGAG
>TU2016358
TCTGTAAAGTATGTTTTATTCCAAAAACAATCACCGTGTGACTTGGCATCATCTCCTGCGATTATTATCATGCGCAAAACATTATTCAAATGaataacaaaaaaacaataaacattaGTTTTTATCTTGAAATACTAAAAAAACATACGGAATGAAAAacgtaaaaaatataaaaaattggGAAGTAAAAGTTATTTGAAGCTTTTTACATTAATCTCTAAATCAACCACAACAGAACATTACCATTTCACAACACTGTATGTGTCTTCTATATATCCAGGTTGACTTCAATGAAGACGTCACCTGAACCTACAGGGTCAAAGGTCAGGCCTGGAGGCTCAGGGGTCATCCCCATGGCAACGTTGTTGTTGTTCCCATTCTGCTCCCCGTTGTCCGATTTGTCCGACTGcttgtcactcaggtccaggTCCAGGCTAAAGCCCACCCTCTTTAAGGGCGGAGTCAGAGTGATCGCACAGTCACAGAAGTTGTCGAAGCTGTCGCCATCACCATCACTATCACCATGACCCTGCTTCTCTCCGTTCTCTCCAGTGGACCCCGCCTCCCCAGCTGAGCCATTGGCTACAGGGCTCATAGCCTGGTGGTCATCACCACCACCCTCTATCACGTACTCAAAACCTCCAGCTTTCTCATTGGGTTCGAAGGTTCCGGCTTGTTCCATGCAGGTGAGTGGGGTGTCGTGGTCGTATCCCGCAAGGTGCAGGTCAAACGAATACTTCCTTGACTTCTTCCTCAGGATATAGagaaccaccaccagacacacaaTGACTAACAATATGAGAATCAGGATTACATAgcCCGGTGATGATGTCGTTATGGTATTCTTCTCATCCACTTCCTCAGATTCCTCAGATTGGCTGGTAGTCGCCTCCGACGACATCGTTTCCATGGCAAACGTTGTCACGTCGTCCAACAAGGTTCCAATATCCCCATCTCCGTTCTGGTCTTGGGATTGGTTGCCATCTCTACCGACGGTGATGTTGTTGGTAAGGTTAGCGTCACGGTTGTCTGGCTGGACCAGGGTAGTAACTGTAGGACTGTTCTGATTGGCTGAGGGGGTATGAGCAGGAGTGGTAGTAAGGGTGGTAGTAAGGGTGGTAGTAAGGGTGGTAGCGGGGATGGGGTCATCCTTGTTGGGCCCTGTTTTTTCGTCTGCTTTGACTATGTGGAGGATCAGAACCACACCCAGGATATAAAGGGGAATGAAGATCGATGCCATGTTGTTGATTTATCAATAGTTCCGTCTGCATCTGAAGGGTTGAGGTAGGTCCGTCACACGTGAAAACAAGAAAGTCTTTTTTCTCTTCTTCAGTGTCTCTCTGACAGGAACTGAGTCACAGACCACAAACAGCTGGGCTGTCTCTCAACCGTGTAAAAGTGACTTCctcccctcgtctcctctccttcctctgcacTGAATCCTCCTGACTCAGAATCAACGTGCTGAAAACAATATATTTTACAGGATGCTTGCAAATGTATGGTTTCATCTGCCCAGTGGGTTCATAAAGGAGAGAAattagaggagaagagaggagatgaaaagaggaaatgaggaaaggagatgaggagatgaagctgcttcagactattgagatgcagccctggTCCTCTGACAGGATGCTGAG
>TU2016357
AATTTCAAATAAGCGTAAAAATGTATAaacatttacagtaccagtcagaagtttggacactcctaccagcttcattaggtagtcacctggaatgcactcCTACTCCaggagtttttctttatttttactattttctacattgtagacatcaacactatgaaataacacatgtggaatcatgtagtaaccaaaaaattattcaaaatagccaccctttgcatgatgacagctttgcacactcttggtcttctctcaaccagcttcattaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaatgcgtttgagccaatcagttctgttgtgacaaggtaggggtgtgtacagaagatagccctacttggtaaaataccaagtccatattatggcaagaacagctcaaataagcaaagagaaacgacagtccatcattactttaagacatgaaggtcagtcaatacggaacatttcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaccatcatgtgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcagattgcaatccaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaaatgtttagaggagacagtgtgaatcaggtcttcatggtcgaattgctgcaaagaaaccacaactaaaagacaccaataagaagaagagatttgcttgggcagaaacacgagcaatggacattagattggTGGAAATCTGAGATCTTTGAGTCCTAATGAGAcctaatttgagatttttggctctaaccgtcgtgtctttgtgagacgcagagtaggtgaacggatgatctctgcatgtgtagttcccaccgtgaagcatggaagaggaggtgtgatggtgtaggggtgctttgctggtgacactgtctgtgatttatttataattcaaggcacacttaaccagcatgactaccacaacattctgcagtgatacaccatgccatctggtttgtgcttagtgtggctatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccgacctgaacccaattgagatggtttgggatgagttggactgcagagtgaaggaaaagcagccaacaagtgctcagcatatgtggaaactccttcaagattgttggaaaagcatgccaggtgaagctggttgagagaatgccaagagtgcgcaaacctgtcatcaaggcaaagagtggctactttgaaaaatcaaaaatctcaaatatattttcatttgtttaacactttttttggtacatgattccatagttttgatgtcttattaTATTACAAAGTATAAAATAgtaacaaattaagaaaaacccttgaatgagtaggtgtgactgGTACATTGATCATATTGATGGTACCTGCTGTGGCACTGCCTCCTCTAGTAGATTCTATCAGCACCGGTGATGATGTCGTTATGGTATTCTTCTCATCCACTTCCTCAGATTCCTCAGATTGGCTGGTAGTCGCCTCCGACGACATCGTTTCCATGGCAAACGTTGTCACGTCGTCCAACAAGGTTCCAATATCCCCATCTCCGTTCTGGTCTTGGGATTGGTTGCCATCTCTACCGACGGTGATGTTGTTGGTAAGGTTAGCGTCACGGTTGTCTGGCTGGACCAGGGTAGTAACTGTAGGACTGTTCTGATTGGCTGAGGGGGTATGAGCAGGAGTGGTAGTAAGGGTGGTAGTAAGGGTGGTAGTAAGGGTGGTAGCGGGGATGGGGTCATCCTTGTTGGGCCCTGTTTTTTCGTCTGCTTTGACTATGTGGAGGATCAGAACCACACCCAGGATATAAAGGGGAATGAAGATCGATGCCATGTTGTTGATTTATCAATAGTTCCGTCTGCATCTGAAGGGTTGAGGTAGGTCCGTCACACGTGAAAACAAGAAAGTCTTTTTTCTCTTCTTCAGTGTCTCTCTGACAGGAACTGAGTCACAGACCACAAACAGCTGGGCTGTCTCTCAACCGTGTAAAAGTGACTTCctcccctcgtctcctctccttcctctgcacTGAATCCTCCTGACTCAGAATCAACGTGCTGAAAACAATATATTTTACAGGATGCTTGCAAATGTATGGTTTCATCTGCCCAGTGGGTTCATAAAGGAGAGAAattagaggagaagagaggagatgaaaagaggaaatgaggaaaggagatgaggagatgaagctgcttcagactattgagatgcagccctggTCCTCTGACAGGATGCTGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2016359 False 956 lncRNA 0.48 4 62689513 62741819
TU2016358 False 1649 lncRNA 0.46 7 62732645 62741819
TU2016357 True 2467 TUCP 0.43 4 62735051 62741819

Neighbor

gene id symbol gene type direction distance location
txk LOC105031518 coding upstream 81090 62551264 ~ 62608423 (+)
LOC110530874 LOC106578150 coding upstream 224084 62456592 ~ 62465429 (+)
LOC118942972 LOC106592795 coding upstream 246575 62404906 ~ 62442938 (+)
rnf175 rnf175 coding upstream 383601 62272235 ~ 62305912 (+)
fga LOC106608433 coding upstream 443338 62218616 ~ 62246175 (+)
LOC110500820 LOC100706866 coding downstream 30550 62772369 ~ 62797382 (+)
LOC110500953 LOC106594432 coding downstream 138979 62873681 ~ 62903536 (+)
LOC118942975 NA coding downstream 178157 62919976 ~ 62921400 (+)
mogat3a LOC105008562 coding downstream 211872 62953691 ~ 62976115 (+)
LOC110500813 tsc22d4 coding downstream 249296 62991115 ~ 63050683 (+)
G1760500 NA non-coding upstream 11734 62677479 ~ 62677779 (+)
G1760450 NA non-coding upstream 14110 62674385 ~ 62675403 (+)
G1760448 NA non-coding upstream 17083 62666712 ~ 62672430 (+)
G1760442 NA non-coding upstream 28160 62658769 ~ 62661353 (+)
G1760436 NA non-coding upstream 45415 62643817 ~ 62644098 (+)
G1760526 NA non-coding downstream 6540 62748359 ~ 62748592 (+)
G1760531 NA non-coding downstream 16739 62758558 ~ 62759533 (+)
G1760533 NA non-coding downstream 20588 62762407 ~ 62762652 (+)
G1760519 NA non-coding downstream 36345 62778164 ~ 62778838 (+)
G1760536 NA non-coding downstream 37616 62779435 ~ 62779776 (+)
G1759267 NA other upstream 1878893 60810202 ~ 60810620 (+)
G1759168 LOC101154678 other upstream 1967041 60722158 ~ 60722472 (+)
G1758786 NA other upstream 2330162 60358349 ~ 60359351 (+)
G1758818 NA other upstream 2336479 60351646 ~ 60353092 (+)
G1758801 NA other upstream 2362893 60322215 ~ 60326620 (+)
G1760587 NA other downstream 69956 62811775 ~ 62814241 (+)
G1760800 NA other downstream 468314 63210133 ~ 63215753 (+)
si:ch73-265d7.2 NA other downstream 625887 63363590 ~ 63372213 (+)

Expression

G1760504 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1760504 Expression in each Bioproject

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G1760504 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G99518 NA non-coding NC_048565.1 CM023219.2 89873759 ~ 89874904 (-)
eurasian perch (Perca fluviatilis) G81897 NA non-coding NC_053119.1 CM020916.1 3117605 ~ 3125481 (-)