XLOC_000369


Basic Information

Item Value
gene id XLOC_000369
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31141119 ~ 31144527 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003082
AAAAGCACAATATCATCCCCACACTGTcaggtgtttgtgttgtgttccaTGTGCTTCCTGTTTTTGTCATGTGATTCCTTTATTCCATTTTCCCACCATGTGTTAATGTTTCAGTGCTTCCACCTGTGTTTTTCTCCTGTGTGTAATTAGTTCAGTTATGTCCTGTGTATTTAAGCTCCTGGTTTCTGTCTGCTTTTTGTCTGGTGTTGAAATGTTAACACTGCATGTCTTTCCTGAGTCTCCAGTGGGCCAAGTGTCTAAAGTAAGTGTTTGTTAATTGATCTGTATATTTGGATAATTCCTGAGGTTTGTGTGTTTATGGGAAGAGAGTAAATGTGACACACACAAATGGCTATTAATGGATATTAACCTACACACTGACCAAACTAATCTAatgccaatttcattcattcatttttcttgtcagcttagtccctttattaacccagggtcgccacagcggaatgaaccgccaacttatccagcacgttttttgcatcggatgccctaccagctgcaacccatctctgggaaatatccacaaactcattcatacactacggacaatttatcctacccaattcacctgtaccacatgtctttggactgtgggggaaaccagaagacctggaggaaacccacacgaacgcagggagaacactcaaactccacacaaacgccaaccaagccgaggttcgaaccagcgaccttcttgctgtgaggcggcagcactacctgctgcgccactgcatcacccttcTAACGGCAATTTAGCACAAAAAAGCCAGTGATATCAACACACTACCATGTAAATCTTgcccacactgtaaaataaaacatgacaaaTCAAGAcgacaaatattttatttttattacttttaaatattttagtaagTTAGTATATATTTGTAAGTTATATATAGTTtaacttgatatttttttttttgtcagtttaattgatgtaacttgagatgactagaacaattttattcaccaaaaaaaaaaaaattatatatatatatatatatatatatatatatatatatatatatttatatatatatttatatttatatatatatatatttatatatatatatttatttatatttatatatttttatatatttatatatttatatatatatatatatatatatttatatatatatatatatttatatttatatatatttatatatttatatatatatatatttatatatttatatatatatttatatatttatatatttatatatatatatatttatatatatatatatatatatttattatatttatatatatatttatatatatatatttatatatatatatatatatatatatatatatatttatttatatatatatatatttatttaattttttttttttttttttttttttttttttaacagtgcaaaGACAAATACATTGCTCCTTGCTAAAATCAGAGTAAGAGCAGACTCAAGATTTACATTTTATTAGTATCTTGTGTTGTAAAATATGTAGAGGAATTCAAGGGGTGACACGGTGgatcagtggttggcactgtcgcctcacagcaagaaggtcgctggtttgagtcctggctgggtcaattggcatttctgtgtggtgtttgcatgttctccccagtaGGTGTCGGTTTCCTAGGGGttctctggtttccaccacagtccaaaggcatgcagtataggtgacttgaataaactacattgactgtagtgtatgggcatccgctgtgttaaacatatgctggataagttagcggttcattctgctgtgttgacccctgatcaataaagggattACTAAGCTGagggtgaatgaataaatgaggtaAATTTAAAGCTGACTGTTCCTTTAAAAACGTCAACAACTGTGATGTTCTGTTTTGGTCACATGGTGGCACTGGtctcatttctttaaaaacattgataatTAGATCGCACCAGACTACATTGCAAAAAATATGATGAAAACACACAGAGAAGCACACACAATTTAGTGAACAGAAGTTGCTTATAAAGACATAAATGGTTAGAAAAGTTAAACTTGACACACAGTTGTCTGCTTTTTGTAAAGTTTTAATTCTGGTTGCATCTATACTCCCATGGTCTTTTGGATAACAAAATGTCCTGCACACTTCACAATCTCAGCATCATTACATAATTTGAGGATTGTTTGATGATTGATCATTAACAGCCTAATCAACCCTTTTCACATTTTAGGAAGCAGACGGTACTCTTCTAGGACTGAACAGATAAAACAACTAATAcacattttgaataaataattcatttctgTGACTGTAAAAAAGATAGACAAACTTCTATTACAGTACATTggccagaaaaaaaaagaggaaatatgcTGCATTTGCTGTCATTCCCTTAAGCAGGGTCCATATATAGAAACACTTATGAAGCAGCATTTAGTATGTTTCTGTTATTTAATGCTAGATGAAAATGTGTATAGACCACTTCAATGTGGAGATGCCATGGGCCCCTAAACATTTCCtttttgttgtcaaactattttaataactgtAAGAACAGGCAATTCAATTATATCTCAAtgttaaaacagttgtcataacgttatttatcaatatgtggacttttttaggattcttggaagctatggaaaataaaaatgtaaacaggaaatacattaggaccattgttatagTTTACATCCTTCATAATGcactatacatataaaaaataccCCCCAACCCTCCTGTATGCTGTATACTCTTCAACCACATTAAAATGTAGGTTGTATTTTGAGTTTAAAATATATGCCTTCATGATGTATGCAATAGTAATATATAACTTCTTTAATGTTCCACATTATATTCTCTGGCAGAACCTCAGGGCCCACCACCCAGTGACCCATATATGACCAAGGAGAACCATTGCTTCAGGGCCATCAGAACATGTGACATGATGGCATTATTGTGACTCAGACATAGCAGTATGAAGATGATATAGAGGTTATGGACATGTCCACTAACTGTCCTGAACAAGAAAGTGTTTTTGTCCAAATATTCAGCAATGCATGCGTTCAGGATAAATGATCTCAAAGCATCTAAATCTTGATTGCCTGTGTTAACCGCTGATGATTGTGCTGTAAATTTTAGAAAAACTTTTTATTCTGCTCTGTAAAATGTGTAATGTATGAAAGTGCTTATTTATAATGAATGCTGCAATGAGTTTTGACTGACTGTGTATGGGGTTTGACCCCTGCTCCAAATGCACTGCTATTAGCTGTAACTGAAATGTAAAGAAGGAAGCTCTAGTGATTAGTGTGCTTTATTTTGCACTCGTGGATTATTTCCTGTGGTAAAAAAACAGACTAAATAAAGATTCATTCTCTGAGGTCATTGATAAAAAAA
>TCONS_00000636
GTCTGGTGTTGAAATGTTAACACTGCATGTCTTTCCTGAGTCTCCAGTGGGCCAAGTGTCTAAAAACCTCAGGGCCCACCACCCAGTGACCCATATATGACCAAGGAGAACCATTGCTTCAGGGCCATCAGAACATGTGACATGATGGCATTATTGTGACTCAGACATAGCAGTATGAAGATGATATAGAGGTTATGGACATGTCCACTAACTGTCCTGAACAAGAAAGTGTTTTTGTCCAAATATTCAGCAATGCATGCGTTCAGGATAAATGATCTCAAAGCATCTAAATCTTGATTGCCTGTGTTAACCGCTGATGATTGTGCTGTAAATTTTAGAAAAACTTTTTATTCTGCTCTGTAAAATGTGTAATGTATGAAAGTGCTTATTTATAATGAATGCTGCAATGAGTTTTGACTGACTGTGTATGGGGTTTGACCCCTGCTCCAAATGCACTGCTATTAGCTGTAACTGAAATGTAAAGAAGGAAGCTCTAGTGATTAGTGTGCTTTATTTTGCACTCGTGGATTATTTCCTGTGGTAAAAAAACAGACTAAATAAAGATTCATTCTCTGAGGTCATTGATAAAAAAA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093358

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003082 False 3409 lncRNA 0.33 1 31141119 31144527
TCONS_00000636 True 593 lncRNA 0.39 2 31141317 31144527

Neighbor

gene id symbol gene type direction distance location
XLOC_000368 eef1a1l2 coding upstream 10897 31110817 ~ 31130222 (+)
XLOC_000367 itga6b coding upstream 76413 31019165 ~ 31064706 (+)
XLOC_000366 metap1d coding upstream 166954 30946231 ~ 30974165 (+)
XLOC_000365 BX548015.2 coding upstream 281595 30853969 ~ 30859524 (+)
XLOC_000364 bora coding upstream 405641 30723380 ~ 30735478 (+)
XLOC_000370 NA coding downstream 210058 31354585 ~ 31359319 (+)
XLOC_000371 CT573247.1 coding downstream 374712 31519239 ~ 31520972 (+)
XLOC_000372 slc2a15b coding downstream 428698 31573225 ~ 31598417 (+)
XLOC_000373 fgf8b coding downstream 493747 31638274 ~ 31669901 (+)
XLOC_000374 poll coding downstream 513315 31657842 ~ 31672343 (+)
XLOC_000361 BX255890.2 non-coding upstream 913614 30227391 ~ 30227505 (+)
XLOC_000360 dre-mir-740 non-coding upstream 975054 30165953 ~ 30166065 (+)
XLOC_000358 NA non-coding upstream 1061590 30074635 ~ 30079529 (+)
XLOC_000350 CR774189.1 non-coding upstream 1632646 29507647 ~ 29508473 (+)
XLOC_000380 NA non-coding downstream 865735 32010262 ~ 32011794 (+)
XLOC_000381 NA non-coding downstream 867353 32011880 ~ 32012378 (+)
XLOC_000383 BX901898.1 non-coding downstream 872910 32017437 ~ 32018115 (+)

Expression


Co-expression Network