G1762183


Basic Information

Item Value
gene id G1762183
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64910023 ~ 64914440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2018759
CAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACTACACTCAGTTTGACCTTTGGCCGGTCGGTCAGCATGACCTTAGTGAGACCTCTCATGGATTCCTCCGGTCGCAGAAGATTTCAAGTTGGTCTTCGTACTCTCTCTTCACCATACCAGTGTCCAGCAGTGTTTAATGGTCAGCAGGAAAATATGAGAGTTTGGTTCCGCAGGGACGTGGTGAGGAAATGGGGGACAGTTCTGAGTCGTCTCCTGGTTTGTGGTGTATTGGTGTCTCCTATTAAAATGGCACTCAGTCCTTCCATGGGAGGATTCTGACATAGTCCTCTGTCAAACGACACCTTCTCTTCACCCCTTTCATCTTCATTACAAGTTCCCCTTCCACCTATGAGGATATTGGGTCCCTCTTTGGTTATCTCGCATCCTTATCCAATGACATCCTCTCCTGATGAAAGCACGTCGCCTCTTTGATGACATCACTTGTGGTTGTCAGTGAGGTCAAAATCCAGCACCACGAGTTTAGTCTCCTCTGTTCCGTTCCTGCTGCCAACGGCTgctaccagtctggtgttagatgccctggagagaggagagagagagaggagggttaccagtctggtgttagatgccctggagagaggagagagagaggagggttaccagtctggtgttagatgccctggagagaggagagagaggagggttaccagtctggtgttagatgccctggagagaggagagagagaggagggttaccagtctggtgttagatgccctggagagaggagagagaggagggttaccagtctggtgttagatgccctggagagaggagagagagag
>TU2018756
gccatctgggactcAGATGAAGTCTCATCTTTTCAGTTCCATGATGACAGTCAGGCAGTGGAAAGGATCAGTGGATCATGGAGGTTTTCCTTGGTTGGTCACTGAGGAGAAACTCTGGGCACTGTCCTGTATATGAATCCAGCTGACAGTCAGACTGGCTAGAGAGGCTGGATCCGAAATGGCatcctaaaccctatatagtgcaatacttctGACCAAGCCCCATAAGGGTAGTTAGGGTACGGGCCCAGAGGGGTAGTTGGGGTACGAGAACAGGAGGGGTCGTCAGGGTACGGAACAGGAGGGGTAGTCAGGGTACGGGCCCAGAGGGGTAGTCGGGGTACGGAACAGGAGGGGTCGTCGGGGTACGAGAACAAGAGGGGTAGTCGGGGTACGGACCAGGAGGGGTAGTCGGGGtacggaggaggaggggtagtcGGGGTACGGAACAGGAGGGGAAGCCGGGGTACGGAACAGGAGGGGTAGTCGGGGTACAGGCCCAGAGGGGTAGTCAGGGTACGGGCCCAGAGGGGTAGTCAGGGTACGGGCCCAGAGGGGTAGTCAGGGTACGGGCACGGAGCGATAGTCAGGGTACGGGCCCAGAGGGGCAGTCAGGGTACGGGCCCAGAGGGGCAGTCCGGGTACGGGCCCAGAGGGGCAGTCCGGGTACGGGCCCAGAGGGGCAGTCCGGGTACGCGCCCAGAGGGGCAGTCCAGGTACGCGCCCAGAGGGGCAGTCAGGGTACGCGCCCAGAGGGGCAGTCAGGGTACGGGCCCAGAGGGGCAGTCAGGGTACGGGCCCAGAGGGGCAGTCAGGGTACGGGCCCAGAGGGGCAGTCAGGGTACGGGCCCAGAGGGGCAGTCAGGGTACGGGCCCAGAGGGGCAGTCAGGGTACGGACCCAGAGGGGTCtgatataaagtagtgcactatattgggccTCATACACATTCTACACATCCTGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCTGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCTGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCTGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCTGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCTGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGgtagttacagtaactatacatccagcagtagtctgggtggttacagtaactatacatccagcagtagtctgggtagttacagtaactatacaTCCTGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGCCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCTGCAGTAGTCTGGGTGGTTCAGGAACTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGgtagttacagtaactatacatccagcagtagtctgggtagttacagtaactatacaTCCAGCAATAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGgttacagttactatacatccagCAGTAGTCTGGGTGGTTAGAGTTACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGgttacagttactatacatccagcagtagtctgggtagttacagtaactatacaTCCAGCAGTAGTCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTAACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCTAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCTAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCTAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTACACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACTATACATCCAGCAGTAGTCTGGGTGgttacagttactatacatccagcagtagtctgggtagttacagtaactatacatccagcagtagtctgggtggttacagtaactatacatccagcagtagtctgggtggttacagtaactatacatccagcagtagtctgggtagttacagtaactatacatccagcagtagtctgggtagttacagtaactatacaTCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTGGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACTACACTCAGTTTGACCTTTGGCCGGTCGGTCAGCATGACCTTAGTGAGACCTCTCATGGATTCCTCCGGTCGCAGAAGATTTCAAGTTGGTCTTCGTACTCTCTCTTCACCATACCAGTGTCCAGCAGTGTTTAATGGTCAGCAGGAAAATATGAGAGTTTGGTTCCGCAGGGACGTGGTGAGGAAATGGGGGACAGTTCTGAGTCGTCTCCTGGTTTGTGGTGTATTGGTGTCTCCTATTAAAATGGCACTCAGTCCTTCCATGGGAGGATTCTGACATAGTCCTCTGTCAAACGACACCTTCTCTTCACCCCTTTCATCTTCATTACAAGTTCCCCTTCCACCTATGAGGATATTGGGTCCCTCTTTGGTTATCTCGCATCCTTATCCAATGACATCCTCTCCTGATGAAAGCACGTCGCCTCTTTGATGACATCACTTGTGGTTGTCAGTGAGGTCAAAATCCAGCACCACGAGTTTAGTCTCCTCTGTTCCGTTCCTGCTGCCAACGGCTgctaccagtctggtgttaga
>TU2018758
CAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACAGTCTATACATCCAGCAGTAGTCTGGGTAGTTACAGTAACTACACTCAGTTTGACCTTTGGCCGGTCGGTCAGCATGACCTTAGTGAGACCTCTCATGGATTCCTCCGGTCGCAGAAGATTTCAAGTTGGTCTTCGTACTCTCTCTTCACCATACCAGTGTCCAGCAGTGTTTAATGGTCAGCAGGAAAATATGAGAGTTTGGTTCCGCAGGGACGTGGTGAGGAAATGGGGGACAGTTCTGAGTCGTCTCCTGGTTTGTGGTGTATTGGTGTCTCCTATTAAAATGGCACTCAGTCCTTCCATGGGAGGATTCTGACATAGTCCTCTGTCAAACGACACCTTCTCTTCACCCCTTTCATCTTCATTACAAGTTCCCCTTCCACCTATGAGGATATTGGGTCCCTCTTTGGTTATCTCGCATCCTTATCCAATGACATCCTCTCCTGATGAAAGCACGTCGCCTCTTTGATGACATCACTTGTGGTTGTCAGTGAGGTCAAAATCCAGCACCACGAGTTTAGTCTCCTCTGTTCCGTTCCTGCTGCCAACGGCTgctaccagtctggtgttaga
>TU2018757
gccatctgggactcAGATGAAGTCTCATCTTTTCAGTTCCATGATGACAGTCAGGCAGTGGAAAGGATCAGTGGATCATGGAGGTTTTCCTTGGTTGGTCACTGAGGAGAAACTCTGGGCACTGTCCTGTATATGAATCCAGCTGACAGTCAGACTGGCTAGAGAGGCTGGATCCGAAATGGCatcctaaaccctatatagtgcaatacttctGACCAAGCCCCATAAGGGTAGTTAGGGTACGGGCCCAGAGGGGTAGTTGGGGTACGAGAACAGGAGGGGTCGTCAGGGTACGGAACAGGAGGGGTAGTCAGGGTACGGGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2018759 False 923 lncRNA 0.50 1 64910023 64910945
TU2018756 False 4150 lncRNA 0.49 1 64910291 64914440
TU2018758 False 655 lncRNA 0.48 1 64910291 64910945
TU2018757 True 325 lncRNA 0.53 1 64914116 64914440

Neighbor

gene id symbol gene type direction distance location
LOC118942984 LOC106592811 coding downstream 119665 64776566 ~ 64790358 (-)
LOC118942818 LOC106608414 coding downstream 186239 64663711 ~ 64723784 (-)
LOC110509409 LOC106593257 coding downstream 262218 64590607 ~ 64647805 (-)
LOC118942817 LOC106608410 coding downstream 376653 64525897 ~ 64533370 (-)
cnga1b cnga1 coding downstream 391985 64483522 ~ 64518038 (-)
LOC118942819 LOC106595717 coding upstream 9049 64923489 ~ 64930766 (-)
G1762182 NA non-coding downstream 6799 64902881 ~ 64903224 (-)
G1762181 NA non-coding downstream 7278 64902453 ~ 64902745 (-)
G1762180 NA non-coding downstream 17021 64892776 ~ 64893002 (-)
G1762176 NA non-coding downstream 27097 64882587 ~ 64882926 (-)
G1762175 NA non-coding downstream 27564 64882240 ~ 64882459 (-)
G1762186 NA non-coding upstream 964 64915404 ~ 64915702 (-)
G1762187 NA non-coding upstream 1308 64915748 ~ 64916592 (-)
G1762162 NA other downstream 52838 64856508 ~ 64857185 (-)
G1762085 NA other downstream 155524 64753707 ~ 64754499 (-)
G1762080 NA other downstream 160749 64748504 ~ 64749274 (-)
G1761826 NA other downstream 491971 64417310 ~ 64418052 (-)

Expression


Co-expression Network