XLOC_003692


Basic Information

Item Value
gene id XLOC_003692
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42127415 ~ 42131907 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008428
GACGGGACCACTATCTGCACACGTTGTTGGAGGCATCGCGCAAATAGagGATTTCCTCGCAGGGGGTTTGAGGACCGTGAACACCCACCAGGAGCATGTTcttccctgatgaataaaagcacAAACACAAGGTCTCACCAGCTTTACTGCAGTCAACAGTGAAAGAGGCTTTCTGGCTGATGAAGGCCTTGCTGAGTCCAGGGCCTCGACTGCTGACCCTGCTGGCAGACGAGCTGGTGGAGCGAGTCACGGAATCCACCATCAGACATGACATTTCACTCACGCTGCTCACGTTCACCAGACGCGGACCTGAGGAGAAAAACACTCATCATTACAAAAGTCACTAACACCCTGATCACACACAGTGTTGGGGGAAGTTACTTTTGAAATAATGGACCCTTTTTACGTGTTTAGCTCTCATCAGTATCTTAAATCCCtagaagtttttaatatttaaatttgattgaaaaaaatgtatgagcatttatatgcatttacatatgtattatatcatctttgcatcaaatgacaaaaaaatagttACCGTTTGTGCGAGGCGTTTGAAGGCGTACAGAATGTATTGGTGCAAGACAGTAAATTTGACCTTGTTCTCTTCTCTGTGCACAGTGAgacttaatttatatttaataaattcaaaattattaCATCTGC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008428 True 672 lncRNA 0.43 3 42127415 42131907

Neighbor

gene id symbol gene type direction distance location
XLOC_003691 NA coding upstream 29124 42098047 ~ 42098291 (+)
XLOC_003689 NA coding upstream 57751 42042559 ~ 42069664 (+)
XLOC_003690 NA coding upstream 72814 42053251 ~ 42054601 (+)
XLOC_003688 NA coding upstream 90426 42035787 ~ 42036989 (+)
XLOC_003687 NA coding upstream 109288 42014003 ~ 42018127 (+)
XLOC_003693 CU138553.1 coding downstream 173182 42305089 ~ 42418374 (+)
XLOC_003694 dennd6aa coding downstream 290464 42422371 ~ 42459902 (+)
XLOC_003695 si:ch1073-165f9.2 coding downstream 342787 42474694 ~ 42477772 (+)
XLOC_003696 zgc:110286 coding downstream 346277 42478184 ~ 42481817 (+)
XLOC_003697 arf4a coding downstream 351013 42482920 ~ 42492660 (+)
XLOC_003369 CR854846.2 misc upstream 26004333 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 29415419 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 29433152 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 29441816 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 29447387 12679732 ~ 12680028 (+)
XLOC_003700 FP067440.1 non-coding downstream 440335 42572242 ~ 42572982 (+)
XLOC_003703 LO017916.1 non-coding downstream 493464 42625371 ~ 42625487 (+)
XLOC_003707 NA non-coding downstream 707943 42839850 ~ 42883298 (+)
XLOC_003708 NA non-coding downstream 903651 43035558 ~ 43048021 (+)

Expression


Co-expression Network