LOC118943628


Basic Information

Item Value
gene id LOC118943628
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 1525947 ~ 1531974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038961.1
CTCCTTGATTACTCCCCTTTTATTTGGCTCTCAGTAGACAGCAATCACTAGGTGTTATTGTTTTCTCTTACATTCTGTATACTTCATGTTTTGGTCATCTGCAGTGCttcattattaaactcaccttctgcacctgcttcctgactcccggCATATTATGTTACAGACGTCCAGACAGTGCACAATTGAGACagaactgtagctagctagccaaccttCTTCAACTTTCTCCTAGACTATCAGCTTTTCATACTATAAGGTCTCTATTAGTGGTCCTGCTGGGCCAGCACCTACAACTCCGCCAGCATCTGCTGTTTAGACTCCTCCATTGAGGACTGCAATGAACTTGTCAATGTTCAGTAATAAAGGTTTGGGAGCTCTCATGTGTCTGCAGCAATACCAAACCTTAACTTAGCACGGAAGCCTGTTCAGATGTCCGTAGCCCAGCCAAGTTGTCTACAGCCTTTGTGAGTGCCCCCAACCTTGCATTGGCCTCTTGAGTGCCCAAATCCTTGCATCGCTGTCTATCACCCAGTTGTGCTATCTGcggagttagctccaggtaaatgttgcaattcttcagccattcctggacctgcgaCCAAAATCacctacatatggacagtacgaAAACAAATGacctaatgattctgtctcttcgcagaaAAATCTGCATTCTATTGGTTGTAAGAatgttgtataataatttaaacacAAAAACTCAAAGTTTTGAATCCGGTGTCGTTTTGCATATCAGTTCATAAATCATGTGCCATGGAACCAGTACAGTGAACATCTCTTCCCAAATATTTTGAAATCTATTTTGCACAGCTGTCAATGTTTTGGTCCTTAATTTTCTATAACCAATTTAgatctttaatgcagggccaacagatgagttccctactcccccccccccttcttcttGCCTCCTCcttttttgtggtaatgctgtaatcagttggttgtaattttgggtagagcagacatttccatatatttatgttagcTGATTGTGGAACATAACTCCaacagtcctatttatgatacaTTTAACAGAGATTATAcatgttttaatcaattagtatatttgagtttaaccacaatatttctTGTATTATTTGTCTTTTCTTGtggattaaattgaaattgcAAACAACTTTCTATGgtttgttttaaaaataaaatgttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038961.1 True 1192 mRNA 0.40 5 1525947 1531974

Neighbor

gene id symbol gene type direction distance location
klf5b LOC106586047 coding downstream 97921 1420358 ~ 1428026 (-)
uchl3 uchl3 coding downstream 654462 858239 ~ 871485 (-)
LOC110501241 lmo7 coding downstream 672689 715056 ~ 853258 (-)
acod1 acod1 coding downstream 904007 617941 ~ 621940 (-)
cln5 cln5 coding downstream 910035 610227 ~ 615912 (-)
gpr18 gpr18 coding upstream 475980 2007954 ~ 2013062 (-)
gpr183a ebi2 coding upstream 484094 2016068 ~ 2042770 (-)
LOC110501251 NA coding upstream 910485 2442459 ~ 2466932 (-)
zic5 zic5 coding upstream 952147 2484121 ~ 2489060 (-)
tmtc4 tmtc4 coding upstream 1367852 2899826 ~ 2950860 (-)
G1763668 NA non-coding downstream 58123 1467442 ~ 1467824 (-)
G1763635 NA non-coding downstream 110476 1414989 ~ 1415471 (-)
G1763633 NA non-coding downstream 112279 1413390 ~ 1413668 (-)
G1763631 NA non-coding downstream 113503 1407531 ~ 1412444 (-)
G1763632 NA non-coding downstream 125972 1399589 ~ 1399975 (-)
G1763785 NA non-coding upstream 16678 1548652 ~ 1548972 (-)
G1763790 NA non-coding upstream 18683 1550657 ~ 1550876 (-)
G1763791 NA non-coding upstream 23199 1555173 ~ 1555401 (-)
G1763816 NA non-coding upstream 30039 1562013 ~ 1563363 (-)
G1763818 NA non-coding upstream 51329 1583303 ~ 1583526 (-)
G1763459 NA other downstream 306230 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 1420590 86357 ~ 105357 (-)
G1766126 NA other upstream 1793747 3325721 ~ 3326343 (-)
fgf14 fgf14 other upstream 1915457 3447431 ~ 3774567 (-)
G1769281 NA other upstream 4268787 5800761 ~ 5825307 (-)
G1769618 NA other upstream 4428176 5960150 ~ 5960815 (-)
G1771092 NA other upstream 5719810 7251784 ~ 7256717 (-)

Expression


Co-expression Network