Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110501275 |
| gene name | LOC106581666 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 5023900 ~ 5119712 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| collagen alpha-3(VI) chain isoform X7 |
| id | description |
|---|---|
| K06238 | COL6A; collagen type VI alpha |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021578698.2 | False | 10848 | mRNA | 0.54 | 46 | 5023900 | 5119712 |
| XM_021578699.2 | False | 10845 | mRNA | 0.54 | 46 | 5023900 | 5119712 |
| XM_021578700.2 | False | 10731 | mRNA | 0.54 | 45 | 5023900 | 5119712 |
| XM_021578701.2 | False | 10662 | mRNA | 0.54 | 45 | 5023900 | 5119712 |
| XM_021578702.2 | False | 10545 | mRNA | 0.54 | 44 | 5023900 | 5119712 |
| XM_021578703.2 | False | 10212 | mRNA | 0.54 | 45 | 5023900 | 5119712 |
| XM_021578704.2 | True | 9615 | mRNA | 0.54 | 44 | 5023900 | 5119712 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110501273 | LOC106581650 | coding | upstream | 248002 | 4763021 ~ 4775898 (+) |
| ppp2r3b | LOC106581654 | coding | upstream | 461692 | 4501681 ~ 4562208 (+) |
| upf3a | LOC106581644 | coding | upstream | 1105421 | 3888821 ~ 3918479 (+) |
| cdc16 | LOC106581643 | coding | upstream | 1138541 | 3849985 ~ 3885359 (+) |
| itgbl1 | itgbl1 | coding | upstream | 1577035 | 3331567 ~ 3446865 (+) |
| LOC118943573 | NA | coding | downstream | 72217 | 5191929 ~ 5197396 (+) |
| obsl1b | LOC106581677 | coding | downstream | 548500 | 5668212 ~ 5739785 (+) |
| LOC118943574 | NA | coding | downstream | 786450 | 5906162 ~ 5906899 (+) |
| LOC118943575 | NA | coding | downstream | 1004574 | 6124286 ~ 6128819 (+) |
| LOC110502039 | LOC106581999 | coding | downstream | 2213997 | 7333709 ~ 7339054 (+) |
| G1768251 | NA | non-coding | upstream | 56566 | 4966796 ~ 4967334 (+) |
| G1768241 | NA | non-coding | upstream | 63783 | 4959900 ~ 4960117 (+) |
| G1767641 | NA | non-coding | upstream | 463104 | 4454502 ~ 4560796 (+) |
| G1767627 | NA | non-coding | upstream | 576105 | 4447427 ~ 4447795 (+) |
| G1767625 | NA | non-coding | upstream | 577776 | 4445724 ~ 4446124 (+) |
| G1768353 | NA | non-coding | downstream | 56132 | 5175844 ~ 5176063 (+) |
| G1768355 | NA | non-coding | downstream | 56917 | 5176629 ~ 5176918 (+) |
| G1768356 | NA | non-coding | downstream | 58092 | 5177804 ~ 5178582 (+) |
| G1768499 | NA | non-coding | downstream | 86438 | 5206150 ~ 5206961 (+) |
| G1768501 | NA | non-coding | downstream | 88269 | 5207981 ~ 5208190 (+) |
| G1764876 | NA | other | upstream | 2581392 | 2441073 ~ 2442508 (+) |
| G1764378 | ebi2 | other | upstream | 2995497 | 2016109 ~ 2028403 (+) |
| klf12b | klf12 | other | upstream | 3682518 | 1245440 ~ 1412460 (+) |
| G1762567 | NA | other | upstream | 4301770 | 717522 ~ 722130 (+) |
| G1769230 | NA | other | downstream | 680803 | 5800515 ~ 5825298 (+) |
| G1769403 | NA | other | downstream | 816658 | 5936370 ~ 5936792 (+) |
| G1769461 | NA | other | downstream | 937567 | 6057279 ~ 6057582 (+) |
| G1769469 | NA | other | downstream | 941583 | 6061295 ~ 6061739 (+) |
| G1770757 | NA | other | downstream | 2114862 | 7234574 ~ 7282742 (+) |
