trim63b (LOC100505419)


Basic Information

Item Value
gene id trim63b
gene name LOC100505419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5184849 ~ 5186616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001197215.1
CTACCAAAGAGAAAGGTTCAGCCCCCAGCCTCCATAGTTACTGGCTTGTTAAAGCCTATAGGAGAAGAAGCAGTCGTCCAAGACACTGAAGTTTGAGAAGGCTGTGTCGAAAAAGAGACTCAGCTTTTCTAGCCCAACATTAAGGAGAAGCCTATTTCAGCATGGATGTCCAGAGGACTGCCTCGGTGGTGCGTCCACCAAGCCCCATGGAGAGCCTGGAGAAGCAGCTGAGCTGCCCCATCTGCCTGGAGATGTTCACTAAGCCCGTGGTCATCCTGCCCTGCCAGCATAACCTGTGCCGTGGCTGTGCCAGCGACCTCTACGACTCACGCAATCCCTACCGCTTCTCGGGCGGCGTCTTCCGCTGCCCCACCTGCCGCTTCGAGGTGGTCCTGGACCGCCACGGCGTGCACGGTCTTCAACGCAACCTGCTGGTGGAGAACATCATCGACATCTACAAGCAACAGCAGGAGGGCGGTGGGGGTAGTGGCAGTGGAGACAGCACAGAGACTCCACTGAAGCCCAAGGACTCTAAGGAACCCATGTGCCAGGAGCACGAGGAGGAGAAGATCAACATCTACTGCGTTACCTGCCAGATGCCCACCTGCTCCATGTGCAAAGTGTTTGGCCAGCACAAGGACTGTGAGGTGTCGCCGCTTGCCAGTGTTTACCAGGTGCAGAAGGGCGAGCTTAGCAACGCCATCGACGCCCTGGTGGCGGGCAATGGGCGCCTTCAGGCCCTACTCAACCAAATGGAGGACGCCTGCCGGGCGGTGCAGGACAATGCACAGCGTGCCAAGCAAAGCTTGGGTGAGCGCTTCGACCTGCTCTACGCTGTGCTGGAGGAGCGTAAGGGCATGCTGCTGGAACAGATCGGCAAGGAGCAGGACGAGAAGGTGACAGCATTGCGGGCGCTGGCCCAGCGCTATGGCGAACgactgcaggcaggctcagagctGACTGACACGGCGGTTCAGGCCCTGGAGCAGAGCGGTGCTGCCGAGTTCCTGCTGGCCTCCAAGGGCCTGATTACACAGACCAAGGACACTGCCAAGAGCTCCCTGGGCGAGGAGAGGCCTGAGCCAGGCTTCGAGAAGATGGACCACTTCACACTGTCCACAGAGCATGTGGAGGTCGTCCTGGCCAAGATGGACTTTGGAATGGTCGACGATGACGAGTTTGAGGATGCGGAAGGggacgaagaggaggaggagtgatgaaACTTGAAAATATATGAACAGAACAAATGAACAATTTACTACTTTTGAAGGCTCTTCAACCTGAATGTCCATTGCAGGGACTCTAGTTTCAATGTTTCAGAGATATTAAGATAATTTAGGAGTAAGGAAGGATGGAAGAAGTTAGTTGTGTCAGAATGTTTTCGTAAGGAGTGGATTGACTTTAATACACAATGGCTTACCCCAGTTTTGAGTGCAATATTTAGGATTTTGTACTCTTAAACTTTGCCATTTGGTAAACTATATAGTTTTTTTATACTTTTGTATTTCCATATCAGATTTATTCAGATCTATTTGTTATGTACTTTAGGTTGAATACACTCTGGTTGTTTACACTTGAAGACTTTATCAGGTGTAGAGATTGAGATGGGAATAAAGTTTTGATTTTTGATTTCTCATCTGCATCTAGAATGCCTGTGGTTGTATCAAACGGATAAATGCTTGAATTGATTGCGTGCCCTCAACTGGCAACAGAATATTTAGACAGATCTGTTTTCATCGCAACCTGAAATAAACAATGCTTCAAATGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001197215.1 True 1768 mRNA 0.51 1 5184849 5186616

Neighbor

gene id symbol gene type direction distance location
LOC110501274 LOC106581657 coding downstream 266877 4794026 ~ 4917972 (-)
LOC110502104 NA coding downstream 392442 4790325 ~ 4792407 (-)
LOC110501269 LOC106581656 coding downstream 428588 4675515 ~ 4756261 (-)
LOC110501268 cssa25h2orf47 coding downstream 525158 4653481 ~ 4659691 (-)
LOC110501266 LOC106581655 coding downstream 570191 4610896 ~ 4614658 (-)
lrrc3 LOC106581660 coding upstream 37946 5224562 ~ 5226359 (-)
pcbp3 LOC106581674 coding upstream 57785 5244401 ~ 5417899 (-)
LOC110501280 LOC106581675 coding upstream 250421 5437037 ~ 5612283 (-)
LOC110501282 LOC106581679 coding upstream 554664 5741280 ~ 5788668 (-)
LOC110501283 LOC106581680 coding upstream 618997 5805613 ~ 5900386 (-)
G1768410 LOC106581666 non-coding downstream 65130 5094648 ~ 5119719 (-)
G1768413 NA non-coding downstream 74376 5103454 ~ 5110473 (-)
G1768437 NA non-coding downstream 105534 5076598 ~ 5079315 (-)
G1768402 NA non-coding downstream 153338 5028749 ~ 5031511 (-)
G1768237 NA non-coding downstream 227624 4956975 ~ 4957225 (-)
G1768498 NA non-coding upstream 18952 5205568 ~ 5205775 (-)
G1768500 NA non-coding upstream 20067 5206683 ~ 5206925 (-)
G1768513 NA non-coding upstream 28602 5215218 ~ 5217126 (-)
G1768518 NA non-coding upstream 33571 5220187 ~ 5220396 (-)
G1768533 NA non-coding upstream 45926 5232542 ~ 5232922 (-)
fgf14 fgf14 other downstream 1410840 3447431 ~ 3774567 (-)
G1766126 NA other downstream 1858506 3325721 ~ 3326343 (-)
klf5b LOC106586047 other downstream 3757129 1420358 ~ 1428026 (-)
G1763459 NA other downstream 3965132 1218802 ~ 1219717 (-)
G1762219 LOC106593246 other downstream 5079492 86357 ~ 105357 (-)
G1769281 NA other upstream 614145 5800761 ~ 5825307 (-)
G1769618 NA other upstream 773534 5960150 ~ 5960815 (-)
G1771092 NA other upstream 2065168 7251784 ~ 7256717 (-)
G1771426 LOC106582012 other upstream 2275597 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 3438406 8624815 ~ 8684792 (-)

Expression


Co-expression Network