XLOC_003693 (CU138553.1)


Basic Information

Item Value
gene id XLOC_003693
gene name CU138553.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42305089 ~ 42418374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007156
cctgccgaTTATTATATGACCTAATCTAAAGGGTtactgttcatgttagtaaactcattaactaatggaccattattttaacgTGTTACCAAAAAAAGTTCAAGGAGATGTGCACGCGTGAAAGAAACCCTTTATCATCGTACTCTTTAATAGGGTCTCAAAAATGCCAAAGATGCTTCATAATGAACAAGAGACAATAACAAAAGAAACGTTTAAAAAACAAACTccagagcaccaagaggaaatccacgccaacacggggagaacatgcaaactccacacagaaacgccaactgacacagctgggactcgaaacagcgaccttcttgctgtgagactacagtgctaaccactgagccaccgtggaTGTAACTAATCTAGATTAATTTGTGTCCAGCACTAATAAATCTTTGCCCGCCTCAGTGAATAAACTTGACAGAAAAGAGTCAAACTAGTCAAGAAAAGTGAAGTTGTTTTATTGGAGTCATGCACATCACACGTGTTAGTGCAAATATACCCTTTATCTGTATCCAAGACATTAAATCACTTATATCCTGTCTTTTTAAAATAGATTTCTGACAATGAACTACCGTTGATGTTCAAAACAAGTCATTCTGAGCTCTAAAACAATACAgaccaatataaatatataggtaCAGGCAGTGTGCAGTACTGTACTGTCTTAACTGGAAGTTTCTGACCAATTTAAAGATGTCTTAGAAAACAAGCCTTGTCCATGAGCAAGTGACATATCTCTAtaaaccaatagcgtttagcTGCGAGTCTAGcttcgccttttggtacccttttgccgGGCCAGGTACCCTTTGCAACGGGTatccaaaaagtggtacggtgcggttcgcttttaggtaccctttgacagtggaaacggccataaaaagctaccaaactgtaccgtaccactgaGTGGAAATAGGTCATTAGTTCCCAAACTCTTGAGGCagctagaagaaaaaaaacttggtCTGCAAAACATGCAATCTTAACGTGGAAATAAAAGTCCTGAATTAAAAAACGTGTTTGCAAGGCCAAAAAGATGTTAAAAATTCATGTAGAAAACCAAACTAACAAGGAGAACtcgtattaaataaaaaattacgtATTAATCAAGTGTCTCCAGGAGCAAATTAGATGTGACCAACATCATTTATAAccaatttttattcttttttgtgactataacatatatttacacacaaacattcatacatacatatttacaaCAGCCTAAGCAATCTTCTAACGTGAAGGAcgatttctccaaaaaaaaacacctaaaaataaagaataaaaagtcCATCATGCTGTTTAACGAAAGCATTATGAACAAAATGCAGGAGATCATTTTAAAGCTATCCTTTCTGTGCTACaagctttgctttgttttgcatTCGTGGTTAAATCCATGTTGAAGCGTTCAATGGATTGTTGATGTATGTCTTTCCAGTAaagtgatacaaaaaaaaaataatagaaagagATGCAAAAACAAGTCCTCGACACGTTGAACCAGACGAGTTAGGCTTTTTTTTATGCTCCACGTCTGTTTATTTACAGCACAGCAGACAAATGTGAACCACACACCAAACACATCATCGGTTAATTCATCTTCCTCCAAAAGTCTCTCAAAGCAGCTCGCACAACATCCACATTTCAACAAATACACGCCGTTCACCAACAAAAATAACTTTCCTGTGCTTCCCATTCATTTTTAAAGCATCCGATTTCCAAAACCTATGTTACAGATAAGGCAGCAAAATCCcagagcctttttttttttttttgaggaggtACTGTCGGAGATTTAGTACAGAAACAAACAACAGGAGCTGTGAACTCAAAGTGCTCCTTTTTAGTCCAGACAGCAGGACAGTGTGTTGGTAAAAAgctacgtttgtgtgtgtgtgtgtgtgtgtGTGGCGTTGTTTTGGGCAGGGCGACACCGGGCCACGGAGCGCCCGATCTTGACCGGCTCATCCAGGTAAACATGGCGTTCCTGAAACGGGTGTGAATTCGGGCGGCAGGAGAACACGGCCAGCGCTGAAGGCATTGAGGATGGCTTGGGAGTGTTACTCCAACCAGAGACGAAAGACAGGGTTTCTTGATCCAGACTGACCTGTTGCTCCAATTCTTCCTAATGAATGACCAGCAGACCAACGCACATAGTAATACGAAAAAAATTCCAACTCTACAAAAAGACCCCTGCTAAACCGACTACATAACGTCAACAAGACTGTATATTTATACACTATGTAGATGACTTCTTGCCCCCTTGCGAGACCCCCATGTTGCCGAACCAAACCCAATACAGCTGCCCAATTCCATACAAATCTGTGTGTCCAGATGACAGTCCACAATTCGAGCTGTTATACTTCGTTCCCAACACAATTCATCCTCGTCCCCCTTTACAAGCATAGGCCTGGCCAGTAAACAACCCAGCAACTAGTACACCAATAACCTGTTGAATTGGTCAACCTTTACTCATAAAAAAAGAAGTATTACTGTCACGTTGACATGCGTGTCTATATTTAGAGGGAATGACTGCTGGGCACGAAATGCACTTGTGAAAATGCTAAACCGTAATGAAGATTAATAATGATGTGAGTGGGTTTGGCTGAAGTATGCAGAACAGACCATCAAGCCACCACTCCCCAAGACAGAGTAATTAATATTGAAAAATACCTCAAATGCCTACTTAAACAGACTTCAAATGCAAGTATTTAGCTGTCAGGATTGTATACAAGAGCACAGCTCGCGCGGAGGGTGTTTTCTTGCGCACGAGAGCGTTAGCTGGCTAACTTCATATTAGCTCGTTAGCTTCGCTGAGGTAACACTGGCCTTCTACTTTCACCTTATCGAGCCGTCCAAGCTGGAAGAGACTTTATAAATAACCCCGAGCTGATTTATCCCCGAAAACCAGCTATTTGTTCGGTCTGTGGAACTTTCATGCGCGGAGAATTTGCGTAAATCCAGTATTAGCTCGCGAGCTCGGTAACTAGCTTAGCCTGCTGAGAGACACAAAAATTTCCCCAGAAAAGAAAGTCATACACGAATAAAGTCCATGACACGGTCCCGTGTTAAGCCATGGAGGTCTCCGCTTTCCGGAACGCTGAAATCGGGAGGAAAATCGTTGTGTGCGACGGGATAATTGGAAGTAAGTCGTCCACTTGAagagatatacacacacatacacaccggCCACAAACCGCCGCGGGGCTCGCGCACCACCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007156 True 3254 lncRNA 0.42 2 42305089 42418374

Neighbor

gene id symbol gene type direction distance location
XLOC_003692 NA coding upstream 173182 42127415 ~ 42131907 (+)
XLOC_003691 NA coding upstream 206798 42098047 ~ 42098291 (+)
XLOC_003689 NA coding upstream 235425 42042559 ~ 42069664 (+)
XLOC_003690 NA coding upstream 250488 42053251 ~ 42054601 (+)
XLOC_003688 NA coding upstream 268100 42035787 ~ 42036989 (+)
XLOC_003694 dennd6aa coding downstream 3997 42422371 ~ 42459902 (+)
XLOC_003695 si:ch1073-165f9.2 coding downstream 56320 42474694 ~ 42477772 (+)
XLOC_003696 zgc:110286 coding downstream 59810 42478184 ~ 42481817 (+)
XLOC_003697 arf4a coding downstream 64546 42482920 ~ 42492660 (+)
XLOC_003698 arf4a coding downstream 76157 42494531 ~ 42502940 (+)
XLOC_003369 CR854846.2 misc upstream 26182007 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 29593093 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 29610826 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 29619490 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 29625061 12679732 ~ 12680028 (+)
XLOC_003700 FP067440.1 non-coding downstream 153868 42572242 ~ 42572982 (+)
XLOC_003703 LO017916.1 non-coding downstream 206997 42625371 ~ 42625487 (+)
XLOC_003707 NA non-coding downstream 421476 42839850 ~ 42883298 (+)
XLOC_003708 NA non-coding downstream 617184 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 non-coding downstream 626452 43044826 ~ 43044949 (+)

Expression


Co-expression Network