Gene
RNA
| Item | Value |
|---|---|
| gene id | aff3 |
| gene name | aff3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 7912166 ~ 7954489 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| aff3 | Predicted to be involved in regulation of gene expression. Predicted to be located in nucleus. Predicted to be part of super elongation complex. Is expressed in notochord. Orthologous to human AFF3 (AF4/FMR2 family member 3). |
| description |
|---|
| AF4/FMR2 family member 3 |
| id | description |
|---|---|
| K15195 | AFF3; AF4/FMR2 family member 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036958599.1 | False | 5114 | mRNA | 0.53 | 18 | 7912166 | 7954489 |
| XM_036958600.1 | True | 4529 | mRNA | 0.54 | 17 | 7925591 | 7954488 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118943576 | NA | coding | upstream | 395799 | 7515353 ~ 7516367 (+) |
| LOC110501295 | LOC106582015 | coding | upstream | 423866 | 7480701 ~ 7488300 (+) |
| LOC110501294 | LOC106582012 | coding | upstream | 439565 | 7453053 ~ 7472601 (+) |
| LOC110501293 | LOC106582013 | coding | upstream | 464439 | 7425287 ~ 7447727 (+) |
| LOC118936580 | NA | coding | upstream | 494727 | 7393639 ~ 7417439 (+) |
| rev1 | rev1 | coding | downstream | 1881 | 7956370 ~ 7978486 (+) |
| LOC110501308 | txndc9 | coding | downstream | 34326 | 7988815 ~ 7992218 (+) |
| mitd1 | mitd1 | coding | downstream | 38885 | 7993374 ~ 8006327 (+) |
| cracdla | LOC106582029 | coding | downstream | 62423 | 8016912 ~ 8025026 (+) |
| creg2 | creg2 | coding | downstream | 70874 | 8025363 ~ 8027524 (+) |
| G1771660 | NA | non-coding | upstream | 20422 | 7891346 ~ 7891744 (+) |
| G1771651 | LOC106582025 | non-coding | upstream | 29112 | 7873683 ~ 7883054 (+) |
| G1771648 | NA | non-coding | upstream | 43614 | 7866073 ~ 7868552 (+) |
| G1771592 | NA | non-coding | upstream | 48908 | 7859886 ~ 7863258 (+) |
| G1771589 | NA | non-coding | upstream | 124847 | 7787099 ~ 7787319 (+) |
| G1771750 | NA | non-coding | downstream | 138710 | 8093199 ~ 8093423 (+) |
| G1771754 | NA | non-coding | downstream | 144834 | 8099323 ~ 8099767 (+) |
| G1771755 | NA | non-coding | downstream | 145312 | 8099801 ~ 8100018 (+) |
| G1772083 | NA | non-coding | downstream | 286080 | 8240569 ~ 8316560 (+) |
| LOC110501320 | LOC106581986 | non-coding | downstream | 311343 | 8265832 ~ 8283461 (+) |
| G1771580 | NA | other | upstream | 144658 | 7767065 ~ 7767508 (+) |
| G1771131 | LOC106581993 | other | upstream | 586146 | 7323635 ~ 7326020 (+) |
| G1770757 | NA | other | upstream | 629424 | 7234574 ~ 7282742 (+) |
| G1769469 | NA | other | upstream | 1850427 | 6061295 ~ 6061739 (+) |
| LOC110501322 | LOC106581983 | other | downstream | 403805 | 8358225 ~ 8410070 (+) |
| G1772554 | gpr161 | other | downstream | 1101216 | 9055705 ~ 9056402 (+) |
| G1772556 | LOC106567841 | other | downstream | 1151526 | 9106015 ~ 9122457 (+) |
| LOC110501352 | gpr34 | other | downstream | 1429871 | 9384301 ~ 9387652 (+) |
| G1775959 | NA | other | downstream | 3557476 | 11511965 ~ 11516413 (+) |
