LOC110501323 (LOC106581977)


Basic Information

Item Value
gene id LOC110501323
gene name LOC106581977
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8624815 ~ 8684792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578802.2
TTGAGCACTTTACGCATTTATTTTCGGATCCACCCCTGTGTAAACGTAATTTGCCTAATGACCGCTTGAGTGGAGCAGGACCGTCTCATTTCAAGCAAGCCATTTTCATCCAAGTTCACGCTCCTTGCCGACTCTCCTCGATTAACTTTGACCTTTTGCAAAAGCAGGCGAGAGAGGACGCAGGAGGCGGGCAAATCTAATTGATAAAAGGccaatatgacagacaaaacagaCCGAATGTGCTAgcctgacgactcaaactgaaCTATTCTGCTGCTCTGTGTTCGCTAAATAGTTTTTTCCTCGTCCGTGGGCGTGGCGTTTGGCCGGAGcgaggagtctgggtagccaggcaacaaATGTCCAGTATTCATGCATCGGATTTGAAACAGCGGCGTGCAGCTCGGTTAACGGGAGGAGAAAACGGACAGTACCTTTCCCGAAAACAATGAAGACGGGCACATTTCCTAGGGTTCCGTTCTATCCTAGAAGACACATGGACTAAAAGAAATAGGGGCACCAGGCGAGGCCCTCTGGCTGTCCTCTCAGCTGAGACCTGACTGCTGATTGGAGCCGGCCTGGTGTTCGtataggtgtgtttgtgtgtgaggagATGAAGTCCAGTATGCGTCAGTGGCGGAGGCTGGTGTTTGTGGGGATGTTGGCATGGGCCCTCCTCTTCCTGGTTCTGCTATCCTACTTCCTAGATGCCCGCGTGGACAACGAGGCCCTGACCTCCGCCGGCTCCTCGCTCTCCCAGCATCCCGACACGCGGCGCTTGTCCTCCATCCAAGCCGCCTCCCACCAGCAGCACCACTCCGTCATGGGCTCCCGACCCGAACCCGCCTACACCACCTTTACCACCATCTACCCagaccctaactctaaccattACCCAGACTCCGAAGCAGAGCCTAGCCCCACTTCCACCACCTCAGAGCCTGGCCTGGAGCTGAGCCAGAGCTCAGACAGCGGTCCCTACGGGACCAGccaggagggggtggggggcagcCGACAGCAGCAGGACTACCTGGACCCCCAGACCCTGGCTGCGTGGTCCTCTTTTGGCACGGAGAACGTGGGTTCCCACTCTGACCAGGTGGTGACCCGCAGCCGTGAGAGAACCGCCTGGACCCCCTCTGATGCTGAGTGGGGGCCCAACCGAACCAAGCGCAGATCCTCACGTgaggatgaagagggggaggaggagggggttcaGACGAATAACAGCCACAGGAGGAGGACCACAGTGTGGGGGcgtagggggaagagagatgggtGGGGAAAAGAGGAGGATTTAGAGGAGTACTACTTCTCCAAGTCGGCCTCGGTGGTGCAGCGACTTTGGCGGGGAAGTGTTTCCTCTGGAATGCTGTCCCCGCGGCTGCAGCGCGCTATGCGTGACTACCTGAGTGCCAACAAACACCACGTGACCTATGAAGGACGCAGATGGGCTGCCCAGAGCTCCAGGGGACTGCTGTGTGAGCTGAAGGATCAGGCCAGGCTGAGAACACTGGACGGGTCCGAGCAGCCCTTCTCCTCGCTGGGCTGGGCCCATCTGGTGCCACGCCTGGCCCTGGAGCAGCTCTACAGACAGGGGGGCCAGAGGGGCTTCAGGAGCTGTGCTGTGGTGACCTCTGCTGGGGCTATTCTGCACTCAGGCCTGGGGAAGGAGATCGATTCCCATGATGCAGTTCTGCGGTTCAACGCTGCGCCTACAGAGGGCTACGTGAGAGATGTGGGGAACAAGACCACCATTCGCATCATCAACTCACAGATCCTGGCCAATCCCAAGAACCACTTCAACACCAGCTCCCTGTATAAGAAGGTGACTCTGGTGGCCTGGGACCCTGCTCCGTACGCTGTCAATTTGCACaagtGGTATGCCAGTCCAGACTATAACCTGTTCAGTCCATACGTGGAGCACCGGAGGCTCCACCCCACCCAGCCCTTCTACGTCCTCCACCCCAAATATGTGTGGCAGCTCTGGGACGTCATCCAGGGCAACACCCAGGAGACCATCCAGCCCAACCCACCCTCCTCAGGGTTCATAGGCATCCTTCTGATGATGGCGCTGTGCGAAGAGGTCCACGTGTACGAGTACATCCCCTCGCTGCGACAGACAGACCTGTGCCACTACCACGAGGGCTACTACGACGCAGCCTGCACCCTGGGGGCGTACCACCCACTGCTTTACGAGAAGAGCCTGGTGCAGCGCATCAACACAGGCCCCGAGCGAGACCTGAAGAGGAAGGGGCGCGTCACCCTCCCTGGCTTCAGCACCGTCAACTGTGACCTCTGAACTATCAACTTATGAACTCTGACCCTTAAAAGAAGCCACATGTGGAACCACCACAACCCCACAGGACAAGGGGGAAATGGTGCAATAATAACCCTCTGACCTCTGGGGGAACCCGGAGGGAACCACATAGAACAGTGGAGAACCCAAGCCATAGCCCCTCTGTGTGGGATGGGATCAAACCGGAGGGTGAAGGTCTAGTGTAACTACATttatgtcaggaattttgaacaGAACCCAGACGGGGTGAAACCCAGCCTTCCTTAGAGGATAATGGACCCAAGACGGCCTGAAGTGACTGTATCTCCCGATCTCTGCCATTGCTGAGCCGgaagagaggagagctgtatagtgTAGCAGTAGATTAGTGTtattagattatttttttttatatacagtaccagtcaaaagttggactCAACCCCTGTAATGAgtagttttctttatttttactattttccacattgtataataatagtgaagacatcaaaactatgaaataacacacggaatcatgtagtaaccaaaaaagtgtatattttatatttgagattcttaaa
>XM_036958619.1
ATTTGTTTTGAGCACTTTACGCATTTATTTTCGGATCCACCCCTGTGTAAACGTAATTTGCCTAATGACCGCTTGAGTGGAGCAGGACCGTCTCATTTCAAGCAAGCCATTTTCATCCAAGTTCACGCTCCTTGCCGACTCTCCTCGATTAACTTTGACCTTTTGCAAAAGCAGGCGAGAGAGGACGCAGGAGGCGGGCAAATCTAATTGATAAAAGGccaatatgacagacaaaacagaCCGAATGTGCTAgcctgacgactcaaactgaaCTATTCTGCTGCTCTGTGTTCGCTAAATAGTTTTTTCCTCGTCCGTGGGCGTGGCGTTTGGCCGGAGcgaggagtctgggtagccaggcaacaaATGTCCAGTATTCATGCATCGGATTTGAAACAGCGGCGTGCAGCTCGGTTAACGGGAGGAGAAAACGGACAGTACCTTTCCCGAAAACAATGAAGACGGGCACATTTCCTAGGGTTCCGTTCTATCCTAGAAGACACATGGACTAAAAGAAATAGGGGCACCAGGCGAGGCCCTCTGGCTGTCCTCTCAGCTGAGACCTGACTGCTGATTGGAGCCGGCCTGGTGTTCGtataggtgtgtttgtgtgtgaggagATGAAGTCCAGTATGCGTCAGTGGCGGAGGCTGGTGTTTGTGGGGATGTTGGCATGGGCCCTCCTCTTCCTGGTTCTGCTATCCTACTTCCTAGATGCCCGCGTGGACAACGAGGCCCTGACCTCCGCCGGCTCCTCGCTCTCCCAGCATCCCGACACGCGGCGCTTGTCCTCCATCCAAGCCGCCTCCCACCAGCAGCACCACTCCGTCATGGGCTCCCGACCCGAACCCGCCTACACCACCTTTACCACCATCTACCCagaccctaactctaaccattACCCAGACTCCGAAGCAGAGCCTAGCCCCACTTCCACCACCTCAGAGCCTGGCCTGGAGCTGAGCCAGAGCTCAGACAGCGGTCCCTACGGGACCAGccaggagggggtggggggcagcCGACAGCAGCAGGACTACCTGGACCCCCAGACCCTGGCTGCGTGGTCCTCTTTTGGCACGGAGAACGTGGGTTCCCACTCTGACCAGGTGGTGACCCGCAGCCGTGAGAGAACCGCCTGGACCCCCTCTGATGCTGAGTGGGGGCCCAACCGAACCAAGCGCAGATCCTCACGTgaggatgaagagggggaggaggagggggttcaGACGAATAACAGCCACAGGAGGAGGACCACAGTGTGGGGGcgtagggggaagagagatgggtGGGGAAAAGAGGAGGATTTAGAGGAGTACTACTTCTCCAAGTCGGCCTCGGTGGTGCAGCGACTTTGGCGGGGAAGTGTTTCCTCTGGAATGCTGTCCCCGCGGCTGCAGCGCGCTATGCGTGACTACCTGAGTGCCAACAAACACCACGTGACCTATGAAGGACGCAGATGGGCTGCCCAGAGCTCCAGGGGACTGCTGTGTGAGCTGAAGGATCAGGCCAGGCTGAGAACACTGGACGGGTCCGAGCAGCCCTTCTCCTCGCTGGGCTGGGCCCATCTGGTGCCACGCCTGGCCCTGGAGCAGCTCTACAGACAGGGGGGCCAGAGGGGCTTCAGGAGCTGTGCTGTGGTGACCTCTGCTGGGGCTATTCTGCACTCAGGCCTGGGGAAGGAGATCGATTCCCATGATGCAGTTCTGCGGTTCAACGCTGCGCCTACAGAGGGCTACGTGAGAGATGTGGGGAACAAGACCACCATTCGCATCATCAACTCACAGATCCTGGCCAATCCCAAGAACCACTTCAACACCAGCTCCCTGTATAAGAAGGTGACTCTGGTGGCCTGGGACCCTGCTCCGTACGCTGTCAATTTGCACaagtGGTATGCCAGTCCAGACTATAACCTGTTCAGTCCATACGTGGAGCACCGGAGGCTCCACCCCACCCAGCCCTTCTACGTCCTCCACCCCAAATATGTGTGGCAGCTCTGGGACGTCATCCAGGGCAACACCCAGGAGACCATCCAGCCCAACCCACCCTCCTCAGGGTTCATAGGTCACCTTCAACGCCGGGTTGCCGTTGGCATCCTCCCCTTCTCTAGACCTCTTCCTGGGTCATGCATCAAGTAGTACAAGGCTGTGTTGCGGTAGGATTTGGGGTGTTTAGGTATTTGTTGAGTCAGACCCCCATATGTCC
>TU2031399
CTGGAGCAGCTCTACAGACAGGGGGGCCAGAGGGGCTTCAGGAGCTGTGCTGTGGTGACCTCTGCTGGGGCTATTCTGCACTCAGGCCTGGGGAAGGAGATCGATTCCCATGATGCAGTTCTGCGGTTCAACGCTGCGCCTACAGAGGGCTACGTGAGAGATGTGGGGAACAAGACCACCATTCGCATCATCAACTCACAGATCCTGGCCAATCCCAAGAACCACTTCAACACCAGCTCCCTGTATAAGAAGGTGACTCTGGTGGCCTGGGACCCTGCTCCGTACGCTGTCAATTTGCACaagtGGTATGCCAGTCCAGACTATAACCTGTTCAGTCCATACGTGGAGCACCGGAGGCTCCACCCCACCCAGCCCTTCTACGTCCTCCACCCCAAATATGTGTGGCAGCTCTGGGACGTCATCCAGGGCAACACCCAGGAGACCATCCAGCCCAACCCACCCTCCTCAGGGTTCATAGGCATCCTTCTGATGATGGCGCTGTGCGAAGAGGTCCACGTGTACGAGTACATCCCCTCGCTGCGACAGACAGACCTGTGCCACTACCACGAGGGCTACTACGACGCAGCCTGCACCCTGGGGGCGTACCACCCACTGCTTTACGAGAAGAGCCTGGTGCAGCGCATCAACACAGGCCCCGAGCGAGACCTGAAGAGGAAGGGGCGCGTCACCCTCCCTGGCTTCAGCACCGTCAACTGTGACCTCTGAACTATCAACTTATGAACTCTGACCCTTAAAAGAAGCCACATGTGGAACCACCACAACCCCACAGGACAAGGGGGAAATGGTGCAATAATAACCCTCTGACCTCTGGGGGAACCCGGAGGGAACCACATAGAACAGTGGAGAACCCAAGCCATAGCCCCTCTGTGTGGGATGGGATCAAACCGGAGGGTGAAGGTCTAGTGTAACTACATttatgtcaggaattttgaacaGAACCCAGACGGGGTGAAACCCAGCCTTCCTTAGAGGATAATGGACCCAAGACGGCCTGAAGTGACTGTATCTCCCGATCTCTGCCATTGCTGAGCCGgaagagaggagagctgtatagt

Function

NR:

description
beta-galactoside alpha-2,6-sialyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578802.2 False 2859 mRNA 0.55 7 8624815 8684785
XM_036958619.1 False 2202 mRNA 0.57 7 8631221 8684792
TU2031399 True 1076 TUCP 0.56 5 8625022 8641138

Neighbor

gene id symbol gene type direction distance location
LOC110502043 LOC106581982 coding downstream 131922 8443607 ~ 8492893 (-)
LOC110501321 fhl2 coding downstream 314346 8294881 ~ 8310469 (-)
mfsd9 mfsd9 coding downstream 450937 8162076 ~ 8173878 (-)
inpp4aa LOC106586779 coding downstream 465300 8100745 ~ 8159515 (-)
si:dkey-4e7.3 LOC106582031 coding downstream 531949 8083817 ~ 8092866 (-)
LOC110501325 LOC106581976 coding upstream 52383 8737175 ~ 8758540 (-)
LOC110502107 grk1 coding upstream 79232 8763292 ~ 8768047 (-)
LOC110501327 LOC106581971 coding upstream 85376 8770168 ~ 8783060 (-)
LOC110501332 LOC106581974 coding upstream 113953 8798745 ~ 8807833 (-)
LOC110501335 pou2f1 coding upstream 142943 8827735 ~ 8851748 (-)
G1773825 NA non-coding downstream 1331 8619447 ~ 8623484 (-)
G1773857 NA non-coding downstream 8007 8616602 ~ 8616808 (-)
G1773855 LOC106581978 non-coding downstream 9799 8614671 ~ 8615016 (-)
G1773851 NA non-coding downstream 15892 8608717 ~ 8608923 (-)
G1773773 NA non-coding downstream 142409 8480013 ~ 8482406 (-)
G1773906 NA non-coding upstream 18491 8703283 ~ 8703505 (-)
G1773966 NA non-coding upstream 120547 8805339 ~ 8805639 (-)
G1773936 NA non-coding upstream 136062 8820854 ~ 8826155 (-)
G1773938 NA non-coding upstream 141509 8826301 ~ 8827680 (-)
G1773977 NA non-coding upstream 242141 8926933 ~ 8929426 (-)
G1771426 LOC106582012 other downstream 1160123 7462213 ~ 7464692 (-)
G1771092 NA other downstream 1368098 7251784 ~ 7256717 (-)
G1769618 NA other downstream 2664000 5960150 ~ 5960815 (-)
G1769281 NA other downstream 2799508 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 4850806 3447431 ~ 3774567 (-)
gpr161a gpr161 other upstream 374184 9044945 ~ 9063520 (-)
G1774133 NA other upstream 416960 9101752 ~ 9123249 (-)
rpl8 LOC106586796 other upstream 604487 9289279 ~ 9291975 (-)
G1773886 NA non-coding upstream 38237 8679375 ~ 8679685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036928 st6gal2a coding NC_007120.7 CM002893.2 6009077 ~ 6127872 (+)