efhc2 (efhc2)


Basic Information

Item Value
gene id efhc2
gene name efhc2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9713415 ~ 9734934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958692.1
CCTCAAACGGGAAGGACGAAAGAACTTCTCACGAGTTGGACGGAGGGAAAAGTATATTTATATCCCAATTAATGCCACTATGGCACTGCCGATGCTGCCTGGAAATTCTCTCAACAAAAACTTGGGGAAAGACAAATTCCACAAGTCCCAGCATTTTGACTATTCCAACGGGGTCCGCATGATGGTGGGCTCAGGGAAGCCAGGCATTGGAGGGGAGTTGCTGTTGGGCCAGAAGTCTCAACCAAACTATTCTGTCTTTCCCAATGGAGAGGGCAGTGACACTCCATCATGGGTGGCCTTTGACAAGCAGgtGCTGAGCTTCAATGCTTTCTTCCAGGAGGCTGTGCCTCAGAAGCGAGAGGAGAAATACCGCGTCAGGAAGTGTAAGATCTATTTCTACCTGGAAGACGACACCATCCAGGTGGTAGAGCCTGAATTAAAGAACAGCGGAATACCACAAGGAACGCTGATTCGTCGGCACCGCATCCCACTGCCCCCTCCAGATGATGAGTGCTTCTACACGGTGCACGACTTCAACATCAACCAGCAGATGGTGCTGTACTCACGCACTTTCATGGTCACTGACTGTGACCCCTTCACCAGAAACTTCCTCAGGAAGATGGGGGTACGGCTCAacccccccacctccactccCCTGGACCCCTACAGCAACCTACGACAAGAGATGGAGAAGAGTATGAAGCCGCTTCGTCCATACGAGAGGCTGGACACGCTCAAGCAGTTCCTGGACCACGACCGCAATGTGCTGCGGTTCTTCTGCCACTGGGACGACTCAGAGAACATGTTTGGGGACCCGCGCGAGCTTACCCTGCACTACTTCTTGGCCGATGACACCATAGAGATCAGGGAGGTCATCTACCCCAACTCAGGCCGGGATGCCACCCCCAAGTTTCTGCACCGTAGCAAGCTGCCCAAGCATTCTCCCAACCCCAAGCGTCAGCCCGGAGATATCACAGACCGTACGGTGCTCAACGTCTTTGGTCCAATGGGCCAGGGAGGACGCTACATCCTGGACAGCCTCAAAacaggtGCGGTCCATGAGCAGTTCTATAAGGACAGTGACCTGACTCTGGGGGGCATGGTCAACGTGTGGGGACGCAGGGTGGTCATCTGTGACTGTGACAACTTCACCAAAGAGTTCTACCGCTCCAAATACGGCATTGaggacttCAGCCCAGTACAGTACAAGGCACCTCTGGCCCCTAAGCCCCCCAGGCCTGTACCTCCCTACAATGGCTTTGGCTCTGAAGAGGACTCTCTGTGCTCCTGCCAGGGCCTGCTGCCCAAACCCCCACAGAAAGACTTCCGCAAGCTCATGGAGAAAGACAGACAGGGCCTTGAGAGCAATGTGCTGAGGTTTATGGGGAAGATGGTGACTGAAAATCCCATCGACAGAGATAGACTCTTCATAATCTCCTTCTACCTCAGTGACGACACCATCTGTGTGTACGAACCGCCTCAGAGGAACACCGGTGTGTTGGCGGGTAAGTTCCTTGAGCGTGGCAGAGTGAAGAAGCCTGGTCAGGAGCTGTTTAAGAGTGAGATGTCCCAGTATTTCAGTGCCCAGGACCTGTATGTAGGAGCCAGGATCAGCCTCAACAACCAAGGCTTCCAGCTGATCGACGCTGATGAGTACGCCTTCAACTACATGGAGCAACACGCTGAGGAGTTCCCCAGGGCTAACATGGGCTCCATTATCAGTAAGATCCGCTCCATCCCTGAGGACAAACAGAATGAGATTAAACAGTTCCTCACCCTCAGTGACCCTGGAAACACTGGACTGATCCCCTATGAACCCTTCAGggGCCTTCTGGTGGGTCTGGAGTGTGGTCTGTCGGAGCACGAGGTGATGATGCTCGGTCGTTGTTTCTGTGAGCGCCAGCAGCCCGAGGCAGAGGTGGGTCTCATGCTGGCTGTGGCTCAGGACCACCTACGCAAGAAACACTTTGAGAGCTTCTCCGACATGACCAGAGCCTTCACACACGAGGACCGACACAGGACTGGTCATCTCTCCACCAAGGAGGCCAGGACCATCTGTAAGGCCTTCCAGCTGCCACTGGCTGAGGACCTGTTGAGGGCCCTCCTCAAGAAGTTTGATGCAGGCTCTGAGGAGATGGACTACCATGCCTTTCTGGCAGGGATCAACTGGAGAGAGAACCCTGCTCCCCCTGTCCTGCCTGACGACGCCCTGAAGTTTAACGTGGACTGGAGCAGGGAAGCCAGAGACCCAGAGGTGAAGAGCATCAACTACTCTGTCCTTCTGGAAGACGTGTTCGGTAGTGTCAACACCAACTCTAAccaacccaacactctaaccaacccaacactctaaccaaccCGACACTCTAACCAACCCGACACTAACAAACGCGACACTAAccaacccaacactctaaccaaccCGACACTctaaccaacactctaaccaaccCAGCACTctaaccaacactctaaccaaccCGACACTCTAAccaacccaacactctaaccaacactctaaccaacccaacactctaaccaaccCGACACTCTAAccaacccaacactctaaccaacactctaaccaacccaacactctaaccaaccCGACAGACGCTCTAACCAACCCGATACTCTAACCAACCCGATACTCTAACCAACCCGACACTAACCAACCCGACACTCTAACCAACCCGACACTCTAAccaacccaacactctaaccaaccCGACACTCTAACcaaccctacactctaaccaacactctaaccaaccctacactctaaccaacactctaaccaacccaacactctaaccaaccCGACACGctaaccaacactctaaccaacactctaaccaaccCAACACTCTAACAAACCCGACACTCTAAccaacccaacactctaaccaacccaacactctaaccaaccCAGCACAAGGACTGAGAGATAGCAAGGAGTACCAGCAGATCATCATCCTATGAACTCAATCACCTCGCTGCTCTCTGTGTATATTTTCACTTTCAATTAAAGAACATGGATTACATTTGCAACCAAACATCGGCCCTTTTAACATGTGTGGGAAACGGTGTGTACACTTGAATTGTGTTATGTGTAAAACAAAGACCCTTAAAAacagtatactgtgtgtgtgggtgtgtgtgtgtgtgtgt
>TU2032124
ATATGAtgaactgactttttggaaatgtgacatcctatgacagtgccacgttgaaagtcactgagtgcttcagtaaggccattctactgccaatgtttgtcaatggagattgcatggctgtgtgctcgattttatacacttgtcagcaatcgatgtggctgaaatagccaaatccactaatttgaagggttgtccacaaacttttgtatatatagtgtatataccccatacccacacacacagagccacacaGGCAGGTACCGTCACGGCCCGCCATCAATCAGTTGGCCAGCGGCCCCAGATCCTTAGCTGCTTGAGTAGCAGCAATTAGTTCCAGCAGTGTGTGAGTGGAGCATTGGAACCAGATGATCCCCACAGACCTGCATATTATgtagcagtcacacacacacacacacactcacacacacacacacacacacacacacacacacacacacatgcacagtagAAATGTGGCATAAAGGAAATTGATAGCTAGCCACGCCACAGGGTCAATCAGCATAGCTTGTTTATGTGGCCATGTAGTTACCCTGGGTTAGTTTCAGATTTGTCTAAAATGTCCTCCCTATCCAATGCCCCTGTAATGAAGACGGTATGTCATAATGTCAAGGACTGGCTCCAGACTACTCAAAAGCACAGGGAAAACAACTGTggcctcttacacacacacacacacacacacgcacatgcatacacgtgcacacacacacacacacacacactcaagcctTTCATCAATGATGATTTCTCATCTGTGCTTGCCTAATATCTGTGCTCGTCCGGTCTGGTCTGTGTATCCAGGACTGGTCATCTCTCCACCAAGGAGGCCAGGACCATCTGTAAGGCCTTCCAGCTGCCACTGGCTGAGGACCTGTTGAGGGCCCTCCTCAAGAAGTTTGATGCAGGCTCTGAGGAGATGGACTACCATGCCTTTCTGGCAGGGATCAACTGGAGAGAGAACCCTGCTCCCCCTGTCCTGCCTGACGACGCCCTGAAGTTTAACGTGGACTGGAGCAGGGAAGCCAGAGACCCAGAGGTGAAGAGCATCAACTACTCTGTCCTTCTGGAAGACGTGTTCGGTAGTGTCAACACCAACTCTAAccaacccaacactctaaccaacccaacactctaaccaaccCGACACTCTAACCAACCCGACACTAACAAACGCGACACTAAccaacccaacactctaaccaaccCGACACTctaaccaacactctaaccaaccCAGCACTctaaccaacactctaaccaaccCGACACTCTAAccaacccaacactctaaccaacactctaaccaacccaacactctaaccaaccCGACACTCTAAccaacccaacactctaaccaacactctaaccaacccaacactctaaccaaccCGACAGACGCTCTAACCAACCCGATACTCTAACCAACCCGATACTCTAACCAACCCGACACTAACCAACCCGACACTCTAACCAACCCGACACTCTAAccaacccaacactctaaccaaccCGACACTCTAACcaaccctacactctaaccaacactctaaccaacccaacactctaaccaaccCGACACGctaaccaacactctaaccaacactctaaccaaccCAACACTCTAACAAACCCGACACTCTAAccaacccaacactctaaccaacccaacactctaaccaaccCAGCACAAGGACTGAGAGATAGCAAGGAGTACCAGCAGATCATCATCCTATGAACTCAATCACCTCGCTGCTCTCTGTGTATATTTTCACTTTCAATTAAAGAACATGGATTACATTTGCAACCAAACATCGGCC

Function

symbol description
efhc2 Predicted to enable alpha-tubulin binding activity. Acts upstream of or within multi-ciliated epithelial cell differentiation and specification of pronephric distal tubule identity. Predicted to be active in axoneme and mitotic spindle. Predicted to colocalize with microtubule. Is expressed in several structures, including forerunner cell group; intermediate mesoderm; notochord; sensory system; and tail bud. Orthologous to human EFHC2 (EF-hand domain containing 2).

NR:

description
EF-hand domain-containing family member C2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958692.1 False 3171 mRNA 0.52 15 9713415 9734934
TU2032124 True 1838 lncRNA 0.48 4 9713522 9716393

Neighbor

gene id symbol gene type direction distance location
ndp ndp coding downstream 15391 9676683 ~ 9698024 (-)
mao LOC106581942 coding downstream 49949 9600179 ~ 9663466 (-)
LOC110501355 LOC106581891 coding downstream 134221 9577907 ~ 9579194 (-)
LOC110501351 cask coding downstream 177499 9328988 ~ 9535916 (-)
rpl8 LOC106586796 coding downstream 421450 9289279 ~ 9291975 (-)
fundc1 fundc1 coding upstream 308 9635535 ~ 9737896 (-)
dipk2b cssa21hxorf36 coding upstream 94388 9829206 ~ 9836013 (-)
LOC118943652 NA coding upstream 148736 9883670 ~ 9883794 (-)
LOC118943578 NA coding upstream 169116 9878934 ~ 9912343 (-)
slc35a5 slc35a5 coding upstream 334609 10069543 ~ 10081799 (-)
G1774410 NA non-coding downstream 45626 9667135 ~ 9667789 (-)
G1774395 NA non-coding downstream 61964 9651093 ~ 9651451 (-)
G1774352 NA non-coding downstream 159073 9554024 ~ 9554342 (-)
si:ch211-218d20.15 LOC106581952 non-coding downstream 554973 9156919 ~ 9165305 (-)
G1774463 NA non-coding upstream 39479 9774413 ~ 9774793 (-)
G1774525 NA non-coding upstream 129819 9864753 ~ 9864963 (-)
G1774527 NA non-coding upstream 131450 9866384 ~ 9866827 (-)
G1774528 NA non-coding upstream 132602 9867536 ~ 9867742 (-)
G1774133 NA other downstream 590166 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 650214 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 945368 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 other downstream 954875 8737175 ~ 8758540 (-)
G1777196 LOC100136012 other upstream 2106139 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2306174 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 2533283 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 2885648 12620582 ~ 12624860 (-)

Expression


Co-expression Network