Item | Value |
---|---|
gene id | LOC110501391 |
gene name | gpm6b |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048586.1 |
NCBI id | CM023240.2 |
chromosome length | 52474311 |
location | 11960390 ~ 12013580 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
gpm6b | Involved in several processes, including extracellular matrix assembly; positive regulation of bone mineralization; and regulation of focal adhesion assembly. Predicted to be integral component of membrane. Predicted to be active in membrane raft and plasma membrane. |
description |
---|
unnamed protein product |
id | name | namespace |
---|---|---|
GO:0016021 | integral component of membrane | cellular_component |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021578926.2 | False | 3484 | mRNA | 0.41 | 7 | 11960390 | 12013580 |
XM_021578927.2 | False | 2038 | mRNA | 0.43 | 7 | 11960395 | 12010492 |
XM_036958734.1 | False | 3828 | mRNA | 0.41 | 7 | 11985922 | 12013580 |
XM_036958736.1 | False | 3794 | mRNA | 0.41 | 8 | 11985922 | 12013580 |
XM_036958737.1 | True | 2385 | mRNA | 0.44 | 7 | 11985924 | 12010492 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110501389 | LOC106581923 | coding | upstream | 25845 | 11920770 ~ 11934545 (+) |
LOC110501387 | LOC106581925 | coding | upstream | 96729 | 11852404 ~ 11863661 (+) |
zgc:103759 | LOC106581882 | coding | upstream | 125049 | 11829466 ~ 11835341 (+) |
LOC110502108 | igfbp-2b2 | coding | upstream | 941318 | 10997396 ~ 11019072 (+) |
slc4a3 | LOC106581928 | coding | upstream | 983109 | 10874131 ~ 10977284 (+) |
LOC110501392 | trappc2 | coding | downstream | 11896 | 12025476 ~ 12030798 (+) |
LOC118943633 | NA | coding | downstream | 105001 | 12118581 ~ 12121181 (+) |
LOC110501399 | LOC106581914 | coding | downstream | 197404 | 12202156 ~ 12270054 (+) |
LOC110501400 | LOC106581913 | coding | downstream | 275098 | 12288678 ~ 12347640 (+) |
cog3 | cog3 | coding | downstream | 343245 | 12356825 ~ 12369056 (+) |
G1776279 | NA | non-coding | upstream | 122 | 11960008 ~ 11960268 (+) |
G1776277 | NA | non-coding | upstream | 2996 | 11957172 ~ 11957394 (+) |
G1776265 | NA | non-coding | upstream | 18713 | 11941424 ~ 11941677 (+) |
G1776156 | NA | non-coding | upstream | 22854 | 11935982 ~ 11937536 (+) |
G1776158 | NA | non-coding | upstream | 24544 | 11934748 ~ 11935846 (+) |
G1776229 | NA | non-coding | downstream | 520 | 12014100 ~ 12014852 (+) |
G1776313 | ofd1 | non-coding | downstream | 3528 | 12017108 ~ 12017863 (+) |
G1776314 | NA | non-coding | downstream | 5256 | 12018836 ~ 12019353 (+) |
G1776315 | NA | non-coding | downstream | 6113 | 12019693 ~ 12020234 (+) |
G1776316 | NA | non-coding | downstream | 7657 | 12021237 ~ 12021480 (+) |
G1775962 | LOC100286503 | other | upstream | 438000 | 11520723 ~ 11522390 (+) |
G1775959 | NA | other | upstream | 443977 | 11511965 ~ 11516413 (+) |
LOC110501352 | gpr34 | other | upstream | 2574557 | 9384301 ~ 9387652 (+) |
G1772556 | LOC106567841 | other | upstream | 2837933 | 9106015 ~ 9122457 (+) |
G1776230 | NA | other | downstream | 17701 | 12031281 ~ 12032340 (+) |
G1776709 | NA | other | downstream | 733094 | 12690062 ~ 12761001 (+) |
LOC110501417 | LOC106581898 | other | downstream | 748357 | 12756352 ~ 12787590 (+) |
G1779170 | NA | other | downstream | 2065917 | 14079497 ~ 14079739 (+) |