Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110501392 |
| gene name | trappc2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 12025476 ~ 12030798 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| trappc2 | Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment and perinuclear region of cytoplasm. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in X-linked spondyloepiphyseal dysplasia tarda. Orthologous to human TRAPPC2 (trafficking protein particle complex subunit 2). |
| description |
|---|
| trafficking protein particle complex subunit 2-like |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| id | description |
|---|---|
| K20301 | TRAPPC2, TRS20; trafficking protein particle complex subunit 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021578929.2 | True | 1889 | mRNA | 0.39 | 5 | 12025476 | 12030798 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110501391 | gpm6b | coding | upstream | 11896 | 11960390 ~ 12013580 (+) |
| LOC110501389 | LOC106581923 | coding | upstream | 90931 | 11920770 ~ 11934545 (+) |
| LOC110501387 | LOC106581925 | coding | upstream | 161815 | 11852404 ~ 11863661 (+) |
| zgc:103759 | LOC106581882 | coding | upstream | 190135 | 11829466 ~ 11835341 (+) |
| LOC110502108 | igfbp-2b2 | coding | upstream | 1006404 | 10997396 ~ 11019072 (+) |
| LOC118943633 | NA | coding | downstream | 87783 | 12118581 ~ 12121181 (+) |
| LOC110501399 | LOC106581914 | coding | downstream | 180186 | 12202156 ~ 12270054 (+) |
| LOC110501400 | LOC106581913 | coding | downstream | 257880 | 12288678 ~ 12347640 (+) |
| cog3 | cog3 | coding | downstream | 326027 | 12356825 ~ 12369056 (+) |
| LOC110502047 | NA | coding | downstream | 373077 | 12403875 ~ 12410259 (+) |
| G1776317 | NA | non-coding | upstream | 1964 | 12022313 ~ 12023512 (+) |
| G1776316 | NA | non-coding | upstream | 3996 | 12021237 ~ 12021480 (+) |
| G1776315 | NA | non-coding | upstream | 5242 | 12019693 ~ 12020234 (+) |
| G1776314 | NA | non-coding | upstream | 6123 | 12018836 ~ 12019353 (+) |
| G1776313 | ofd1 | non-coding | upstream | 7613 | 12017108 ~ 12017863 (+) |
| G1776233 | NA | non-coding | downstream | 7044 | 12037842 ~ 12040338 (+) |
| G1776232 | egfl6 | non-coding | downstream | 12407 | 12043205 ~ 12043522 (+) |
| G1776231 | egfl6 | non-coding | downstream | 17480 | 12048278 ~ 12048549 (+) |
| G1776325 | NA | non-coding | downstream | 27688 | 12058486 ~ 12058775 (+) |
| G1776234 | NA | non-coding | downstream | 27987 | 12058785 ~ 12059896 (+) |
| G1775962 | LOC100286503 | other | upstream | 503086 | 11520723 ~ 11522390 (+) |
| G1775959 | NA | other | upstream | 509063 | 11511965 ~ 11516413 (+) |
| LOC110501352 | gpr34 | other | upstream | 2639643 | 9384301 ~ 9387652 (+) |
| G1772556 | LOC106567841 | other | upstream | 2903019 | 9106015 ~ 9122457 (+) |
| G1776230 | NA | other | downstream | 483 | 12031281 ~ 12032340 (+) |
| G1776709 | NA | other | downstream | 715876 | 12690062 ~ 12761001 (+) |
| LOC110501417 | LOC106581898 | other | downstream | 731139 | 12756352 ~ 12787590 (+) |
| G1779170 | NA | other | downstream | 2048699 | 14079497 ~ 14079739 (+) |
