Item | Value |
---|---|
gene id | LOC110501400 |
gene name | LOC106581913 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048586.1 |
NCBI id | CM023240.2 |
chromosome length | 52474311 |
location | 12288678 ~ 12347640 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
E3 ubiquitin-protein ligase Midline-1 isoform X1 |
id | description |
---|---|
K08285 | TRIM18, MID1; midline 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021578945.2 | False | 3816 | mRNA | 0.47 | 11 | 12288678 | 12347640 |
XM_021578944.2 | False | 3877 | mRNA | 0.47 | 11 | 12306092 | 12347640 |
XM_036958744.1 | False | 3865 | mRNA | 0.47 | 11 | 12306092 | 12347640 |
XM_036958745.1 | False | 3808 | mRNA | 0.47 | 10 | 12306095 | 12347640 |
XM_021578942.2 | False | 3946 | mRNA | 0.47 | 11 | 12322418 | 12347640 |
XM_021578943.2 | True | 4322 | mRNA | 0.47 | 11 | 12328399 | 12347640 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110501399 | LOC106581914 | coding | upstream | 18624 | 12202156 ~ 12270054 (+) |
LOC118943633 | NA | coding | upstream | 167497 | 12118581 ~ 12121181 (+) |
LOC110501392 | trappc2 | coding | upstream | 257880 | 12025476 ~ 12030798 (+) |
LOC110501391 | gpm6b | coding | upstream | 275098 | 11960390 ~ 12013580 (+) |
LOC110501389 | LOC106581923 | coding | upstream | 354133 | 11920770 ~ 11934545 (+) |
cog3 | cog3 | coding | downstream | 9185 | 12356825 ~ 12369056 (+) |
LOC110502047 | NA | coding | downstream | 56235 | 12403875 ~ 12410259 (+) |
LOC110501406 | LOC106581909 | coding | downstream | 129465 | 12477105 ~ 12481687 (+) |
LOC110501408 | LOC106581908 | coding | downstream | 166603 | 12514243 ~ 12534298 (+) |
slitrk5b | LOC106581907 | coding | downstream | 205440 | 12553080 ~ 12560478 (+) |
G1776226 | NA | non-coding | upstream | 182747 | 12104010 ~ 12105931 (+) |
G1776336 | NA | non-coding | upstream | 216423 | 12071997 ~ 12072255 (+) |
G1776329 | NA | non-coding | upstream | 225520 | 12062844 ~ 12063158 (+) |
G1776234 | NA | non-coding | upstream | 228782 | 12058785 ~ 12059896 (+) |
G1776325 | NA | non-coding | upstream | 229903 | 12058486 ~ 12058775 (+) |
G1776537 | LOC106581911 | non-coding | downstream | 75382 | 12423022 ~ 12426776 (+) |
G1776665 | NA | non-coding | downstream | 271508 | 12619148 ~ 12619948 (+) |
G1776653 | LOC106581902 | non-coding | downstream | 278989 | 12626629 ~ 12638963 (+) |
G1776682 | NA | non-coding | downstream | 297060 | 12644700 ~ 12663992 (+) |
G1776695 | NA | non-coding | downstream | 318149 | 12665789 ~ 12667649 (+) |
G1776230 | NA | other | upstream | 256338 | 12031281 ~ 12032340 (+) |
LOC110501387 | LOC106581925 | other | upstream | 434276 | 11852404 ~ 11863661 (+) |
G1775962 | LOC100286503 | other | upstream | 766288 | 11520723 ~ 11522390 (+) |
G1775959 | NA | other | upstream | 772265 | 11511965 ~ 11516413 (+) |
G1776709 | NA | other | downstream | 399034 | 12690062 ~ 12761001 (+) |
LOC110501417 | LOC106581898 | other | downstream | 414297 | 12756352 ~ 12787590 (+) |
G1779170 | NA | other | downstream | 1731857 | 14079497 ~ 14079739 (+) |
G1779636 | NA | other | downstream | 2555155 | 14902795 ~ 14903260 (+) |
G1780353 | NA | other | downstream | 2690459 | 15038099 ~ 15043643 (+) |