Item | Value |
---|---|
gene id | slitrk5b |
gene name | LOC106581907 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048586.1 |
NCBI id | CM023240.2 |
chromosome length | 52474311 |
location | 12553080 ~ 12560478 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
SLIT and NTRK-like protein 5 isoform X2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021578956.2 | False | 5448 | mRNA | 0.41 | 2 | 12553080 | 12560478 |
XM_021578957.2 | True | 6177 | mRNA | 0.41 | 2 | 12553080 | 12560478 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110501408 | LOC106581908 | coding | upstream | 18782 | 12514243 ~ 12534298 (+) |
LOC110501406 | LOC106581909 | coding | upstream | 71393 | 12477105 ~ 12481687 (+) |
LOC110502047 | NA | coding | upstream | 142821 | 12403875 ~ 12410259 (+) |
cog3 | cog3 | coding | upstream | 184024 | 12356825 ~ 12369056 (+) |
LOC110501400 | LOC106581913 | coding | upstream | 205440 | 12288678 ~ 12347640 (+) |
LOC110501415 | LOC106581898 | coding | downstream | 186160 | 12746638 ~ 12753552 (+) |
LOC118936396 | LOC106581898 | coding | downstream | 186347 | 12746825 ~ 12747903 (+) |
LOC110501417 | LOC106581898 | coding | downstream | 195874 | 12756352 ~ 12787590 (+) |
LOC110501420 | tmem50b | coding | downstream | 254733 | 12815211 ~ 12829907 (+) |
LOC110502111 | LOC106581720 | coding | downstream | 429064 | 12989542 ~ 12994640 (+) |
G1776537 | LOC106581911 | non-coding | upstream | 126304 | 12423022 ~ 12426776 (+) |
G1776226 | NA | non-coding | upstream | 447149 | 12104010 ~ 12105931 (+) |
G1776336 | NA | non-coding | upstream | 480825 | 12071997 ~ 12072255 (+) |
G1776329 | NA | non-coding | upstream | 489922 | 12062844 ~ 12063158 (+) |
G1776234 | NA | non-coding | upstream | 493184 | 12058785 ~ 12059896 (+) |
G1776665 | NA | non-coding | downstream | 58670 | 12619148 ~ 12619948 (+) |
G1776653 | LOC106581902 | non-coding | downstream | 66151 | 12626629 ~ 12638963 (+) |
G1776682 | NA | non-coding | downstream | 84222 | 12644700 ~ 12663992 (+) |
G1776695 | NA | non-coding | downstream | 105311 | 12665789 ~ 12667649 (+) |
G1776696 | NA | non-coding | downstream | 108986 | 12669464 ~ 12671587 (+) |
LOC110501399 | LOC106581914 | other | upstream | 303072 | 12202156 ~ 12270054 (+) |
G1776230 | NA | other | upstream | 520740 | 12031281 ~ 12032340 (+) |
LOC110501387 | LOC106581925 | other | upstream | 698678 | 11852404 ~ 11863661 (+) |
G1775962 | LOC100286503 | other | upstream | 1030690 | 11520723 ~ 11522390 (+) |
G1775959 | NA | other | upstream | 1036667 | 11511965 ~ 11516413 (+) |
G1776709 | NA | other | downstream | 186196 | 12690062 ~ 12761001 (+) |
G1779170 | NA | other | downstream | 1519019 | 14079497 ~ 14079739 (+) |
G1779636 | NA | other | downstream | 2342317 | 14902795 ~ 14903260 (+) |
G1780353 | NA | other | downstream | 2477621 | 15038099 ~ 15043643 (+) |