LOC110501418


Basic Information

Item Value
gene id LOC110501418
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12806707 ~ 12812450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470213.2
GGGTTGGTCAGGGGAGGGGTTAATATTTGTTTTGACATAGAGAAGCCACAGCAGTTGACAGTGCTGGAGAGACTAAAAAACTGCTTTTTGTATTTCATCAGACAATTTAGCTAACTACGTTGTGTATCTGTGACATCTCTGTGTGAAATGGTGTGACTGATCATCAACTCGTGGAAGGAGGAGGGTATGCAGAAGAATGGACAGGTGGAGCCGGTGTTCAAACCCCTGGTAACGGAGCCGGAACCAGGCCTGAAGGTGGCAGAGTGTGCGTCTGGTGAATGACGttagagagggacggatagaaaacaggagagagtgtGGAGGAAGGAATGAGAGGAACAACTGTGTAAAAGATGCACTGACTCAGTTGCATTATTATCTGTATTCTGTAAGACTATAGCAGTAACCTCATACGTTGTCCTATAACATGCTATGGAGAGACGGACACTGCATTAATTTATGCTTGCTCATTTCAGGTCAGTATGAGGAATTACATGTACTGCATGTTTTCTCTGGCTCAGTATGAATTTGTATGACACTGACCTTGCACATACAGATGCATTCACCTGCTAGTACAACAGATCACATTTACTGTGGAAAAATTATTCACACAttaggtgcacacacacacacacactcttcccctcccactcctctcctgtgGCCAGGTCTCTGTCCTCTAGGGTAGTTGAAGGTCAGAGTGAAAGAGTAACAAGCAGCAGCAGGCAACGAAGAGAATGATTGCCTGGACATCAATTCCCCACCAGAGGAAATGCCCAGGCAGGAAGACAAAAACAAACCTTCTGCTGTTCATAAAGATATAGCCTCTATTTTTCACTGTATTCTGGGAGATGTGCATTTTCAATAAACAAAGTACCCTTGCCTCCA
>TU2035756
AGAGAAGCCACAGCAGTTGACAGTGCTGGAGAGACTAAAAAACTGCTTTTTGTATTTCATCAGACAATTTAGCTAACTACGTTGTGTATCTGTGACATCTCTGTGTGAAATGGTGTGACTGATCATCAACTCGTGGAAGGAGGAGGGTATGCAGAAGAATGGACAGGTGGAGCCGGTGTTCAAACCCCTGGTAACGGAGCCGGAACCAGGCCTGAAGGTGGCAGAGTGTGCGTCTGGTGAATGACGttagagagggacggatagaaaacaggagagagtgtGGAGGAAGGAATGAGAGGAACAACTGTGTAAAAGATGCACTGACTCAGTTGCATTATTATCTGTATTCTGTAAGACTATAGCAGTAACCTCATACGTTGTCCTATAACATGCTATGGAGAGACGGACACTGCATTAATTTATGCTTGCTCATTTCAGGTCAGTATGAGGAATTACATGTACTGCATGTTTTCTCTGGCTCAGTATGAATTTGTATGACACTGACCTTGCACATACAGATGCATTCACCTGCTAGTACAACAGATCACATTTACTGTGGAAAAATTATTCACACAttaggtgcacacacacacacacactcttcccctcccactcctctcctgtgGCCAGGTCTCTGTCCTCTAGGGTAGTTGAAGGTCAGAGTGAAAGAGTAACAAGCAGCAGCAGGCAACGAAGAGAATGATTGCCTGGACATCAATTCCCCACCAGAGGAAATGCCCAGGCAGGAAGACAAAAACAAACCTTCTGCTGTTCATAAAGATATAGCCTCTATTTTTCACTGTATTCTGGGAGATGTGCATTTTCAATAAACAAAGTACCCTTGCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470213.2 False 888 mRNA 0.45 2 12806707 12812450
TU2035756 True 849 lncRNA 0.45 2 12806708 12812412

Neighbor

gene id symbol gene type direction distance location
LOC110501413 LOC106581899 coding downstream 90055 12684208 ~ 12716652 (-)
LOC110501414 LOC106581900 coding downstream 122732 12648341 ~ 12683975 (-)
LOC110501412 LOC106581902 coding downstream 170670 12627375 ~ 12636037 (-)
LOC110501411 LOC106581904 coding downstream 181847 12620582 ~ 12624860 (-)
LOC110501410 LOC106581903 coding downstream 186506 12607309 ~ 12620201 (-)
ifngr2b LOC106581880 coding upstream 17588 12830038 ~ 12836513 (-)
LOC110501422 LOC106581896 coding upstream 43180 12855630 ~ 12867235 (-)
crfb5 LOC106581895 coding upstream 56069 12868519 ~ 12887935 (-)
LOC110501423 LOC106581741 coding upstream 89525 12901975 ~ 12912654 (-)
LOC110501424 i20ra coding upstream 100311 12912761 ~ 12919173 (-)
G1777781 NA non-coding downstream 18090 12788130 ~ 12788617 (-)
G1777743 NA non-coding downstream 45620 12753586 ~ 12761087 (-)
G1777741 NA non-coding downstream 46046 12752532 ~ 12760661 (-)
G1777742 NA non-coding downstream 52277 12753768 ~ 12754430 (-)
G1777721 NA non-coding downstream 94810 12710695 ~ 12711897 (-)
G1777785 NA non-coding upstream 14587 12827037 ~ 12829877 (-)
G1777848 NA non-coding upstream 106772 12919222 ~ 12919556 (-)
G1777853 NA non-coding upstream 114656 12927106 ~ 12927330 (-)
G1777861 NA non-coding upstream 120415 12932865 ~ 12933125 (-)
G1777441 LOC106581914 other downstream 536593 12268217 ~ 12270114 (-)
G1777286 NA other downstream 765085 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 963648 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 3068851 9635535 ~ 9737896 (-)
G1778140 efnb2 other upstream 356330 13168780 ~ 13172979 (-)
G1778224 NA other upstream 466830 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 2755053 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 2873406 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 4244672 17057104 ~ 17063550 (-)

Expression


Co-expression Network