LOC110501422 (LOC106581896)


Basic Information

Item Value
gene id LOC110501422
gene name LOC106581896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12855630 ~ 12867235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578981.2
agctgtcatcaaggcaaagggtggctactgaaatcaaaatattttatattcttctaacacttgtttggttactacttgattccatatctgttatttcatagtttttattctacaatgtagaaaatagtaaaaatctagaaaccctggaatgagtaggcgtccacacttttgactggtactgtacatggatATTTCACTAGGCCTATAGGCTGCATTGTATGCCTCTTGGGTAAATctgagcaacaacaaaaacatttcagGCTATCCCGTTAAAACAACTAGAGACTACAGAATGTGCATGTTGTAATTACAATTTGAATCTTAATTGACGGATTTCTAACTGTCCTTTTTGTGAGGCGCAGCCAGGAAATAGTTCTGTCCAATGGCGAGTGGTGGGGTCGAGTACCCACTCTATATAAGCAAGCTGAAACAGAAGTtgtcaataaataggccaatgcACCCTGTGTTGTGCTTACTACAGATGGATGGACCTCCCAGGGCTACGGAGAGCTACTTAAGTGACAGCCCTTCACATTTCCCTCAACTGGGAAATGAAAAGTACCGCGCTACAGACACGCCCCCTTTATGAGAGTCACACAAGTGCACATATTTTTCTCTTTGTAAGAAAACCTTATAGCATAGGCTTCTACAATGTCTGAGCCATGTTTACATGTTGATTTCACACACATATTGCACTTTATTTTAGTGTTGTTGAGTAATCATGTGTTTTCATTTCAGAAAATATAAACAAAAATTAACTACAGTAACTTTTGACATTTTCCCGCTGTACCAAATCCGAACCGTAGCGCGACCCCAAAACCAGGTTCTGTGAACTTTTACACCCCTACTCAAGGTACCATCCATAGCCACCTTGTGACAGGATGGCATGTTATTAATGTGATTCCTGTTTGTCTTTATTCTACCTGTTCACTGCGACAGTTGTGAATTTGTGCCTGGGTTGTTCTGGGAATCCCATGTTGCTATGTGTTTTAAGGGCATAGAAACAATATTAAAGGTGGGAGAGGAAGGAGCATCTATCAGATTAAGAATATCAACAAGACCCCAGCCCACCTTTCTTTTCTATGGCCTTGCTGGAAGAGTGTAGTGGCATGGTGTCGTGAGATGGGCGTGCTCCAAACTACATGTCAGACAGTGCTGGTCACTGCCAATGGCATGCCTTCTTTTTCCAGCAAATTCTGTGACCGTTGGTCCATTGGCATGTATGAAGACTGACTGCTGCAAGATGTTGTGTGTTTCCCTATACTGTAACTAAAGCGGTAATCCCCATTCAAAATAAATGAAGGAATTCATGGGGAAACAGGGTAGCTCGTCAGTTTAAACGGTTAAATTTGAACATTTTCAATCACAAGTATGGTGCAGATAATCAACCTCAAGTTTGTCCAGTCAAGACATCTTCAAAACGAAGCCCATCGTGCATGTTGGTTTTTATGTAAATGTTAAACGCATTAGTTTGTCCTTTTTATGATTCTTATAGAATCTGAAATCAAGAATAGTGTCATGTTCTCTGAGACCTTCTCATTATTTGACTTCCTCTTTGTCATGAAAGGTGCTTTGCTCCAACTGTTGCTGATTGGACCCCTGAGTCTTATAGAAGAACTGAATCTCGTGTGTGATTTATTTGAAGGTCTGTTTATTGATGTATTTGTTCTCTGAGCTGAAAACTCCCCTGTCGAACAAATACCTCCTAGAGGTttttcattgtaaatacaacaacATTTTGTCAAAGTTAAAAAAAAAGTGGAAATGATCAGCATCACTTAAGTTGATAAAAGTGACATAAGATATATTCAACAAATAACCATAATGTATATCAGCTAAAGCCTCAAAACCGAAGCCAATACAAATGTGAATTTCCTATGCTTTGTTATTATAACCAGCTACAAACAGCTCTTTGTATTACATgcctgtacagttgaagtcagaagtttatgtacaccttagccaaatgcatttaaactcaattgagatgtacaaactatggccacgctgtcaatgaagcatgccAATGTTGAAAGTTTTataattttaagcttggaaaagacgcccttaaacccagacttgggaccacacagccacttcactgaatagcaggctagtgattgctttgcaatgcttgcagttaggatttgccagtagattgtcgacttgattcataatgatgactgctagctaagattttgaaagtatgttgATGACATGATccgtccaatcaaagctactttAGATGAAATTACGTCAGATCAcatatctgtggccaatgacctcgaaccttcttggatgggcacttcaaaTGTAACTcgatggcagcacccaaggggcttgaattttagAGTTTTACCCTACCCTGACTACACAGCTtgcaaaaatacatttagaaatctatgttattaatttattgcacccacactgctcgtgctcgtcaacgagcgtctgcgttgccaagggctaaaatagaagtcctttCTATTTTTACCGATTTTTAcccaactcccatacggactcaggagagacgCATCctcctggaaggaggagagatcactagaaatgattcggttgaccgttatatgtgtggattaattgtcggagtagggGACGTTGTGCATTTcgggtaaaataacaactcaatgtttatatcccaggacaaatttgctagcaacagcaagctagctaaataggacaaatgagctagcaagctaactagctaaattgcgatacatgtttaatgcttttcgacctgtccccaaattaatgtcattggttcagagtttgttttgatattttaacctgcgtgtcgtgatcacgtttggtgtaGTGTTGTAcatttcatgtattgtttagagTTTTGTCGTGCCTTCGCTGGCATGCATATAAAATAACATGTTTGCCTCACCAAGAttgacatgctaaaattgccactgaaAGTAGTCCTGGTGAATAGTATGCACAAAACAATGGTTGTCTTCATTTATATCTTTGGTCATGCTGTACAATACTGAACATGCTGTATTATTGCATCCAAATTGAGTTTAATTCATATTAAAGTATTTAACTCACCTCATACGTCTTGCCTAAGTGTTTGATTGCATACTGATTAATTGATGTGTAACATGCTGTAACATGCTGTGAACTTGACCTCTGTTACATTTGTGATTTCACTTTTTTGTTCtttgaaaaaaaaattgtatcgGTCACGTGCTGCTTCTTCCAGACAGTGACTAACTTTTAGCACTGTAATTTTGatttcctgtgtgtgtggttggtttcTACATTGACTTATACTGGCGCGGAAAGGTACGATCGTGAACACACGCTTCCACGTGTGTAGGGTATAATGAGAACAACGCAATGCCGCGCATCCTTGTCGCCGTGACTGAAGAAGGGTCGACGTGGAAATAGAGGGGAGGGAAGCGATCGAGACCGGGGATTAAGATATGAAATTACGCCTATTTGCATGGCCAGTTTTTCTCCTTGCATACACCGTGTTTGCTGCGCTGCCTAGACCTTATAATGTGAGGATGGATGCAGTGAACACTCGATACATCATGAAATGGGACTGGAATCACTCCATGGCCAATCACAACATCACGTTCACCGCTCAATTCACATTTTCTCATAAACAGTCGGACGAGAGGTCCTACACAGGGATGTGTATCGGGATAACTGAGGAGAGGTGTGACTTCTCTAGGGAGCTGGCCTACATGGGGTCATACATACTGAGAGTGAGGGCCGAGGGCAGGGGTCAGATGTCAGACTGGTACAGGCTGGAGTTCGTTCCTGATGAACATGCGGACCTAGGCCCCCCATCCCATGTGGCGTTCGATCCAGGGGACACCATGTTAACAGTGAGCTTCAGGGAGCCAATGACGGAGCAGAACACCCCCATGAGATCTGTGTTAGACATGTTCTTCAGTCTGCAGTATTGGGAGAAGCATTCACCCAGCAAGAAACAAGAGAAAGTGTTTGACTCCACAGAGGGAACATTGTTCCCGCTGAAGCCCTGGACAGAGTACTGCCTGCAGGTCAATGCATTCAGCAAATTGTACAATAAGACCAGCCCGTACacacagcaacagtgtgtgaggaCCCTGGGATATTCTCCGTTGTGGAAGGTGTTGCTGGCTCTGCTGGGCTGTGTAGCTCTGATGACGACAGTGCCTGTCTACAGATGCCACAAAAAGAGAAAAAGTTTGGTCTCAAAGCACACATTTCCCAGCAGTATACTgcataacacacaggatacaatATCCCTTCTCCTCCTGCCTCAGGAGGAGAGCTGTGTGGCCACAGTTGTGGTGGCTGTACAGGTAGAGCAGACAAGCCAGGGTCAACAGCAACAGGTCAAGGGTCAGGGAGATGTTGAGGCGGAGCAGGACAGTGGCTCCTCCTCCATCCAGAGAGGACAAGGCAGCTCCAGTCAGGACTCTGGGATCTACTCAGGAGAAGACAGTGGAAAGAAGAGCGCAggatcaacaacaacaagtcaACCTAAAGAGACAcactgagaagaaaaaaaatggatCCCCATAGCAAACTGCTGTAGAGCAATTAGTGGAATTTTGGGGAGCAGATTGGATTCACTGTCAAGAGGAGAGCTCTTGGGGAAATTCTCTTTTAGTCAAATTACTTTTTAAGACTTTTTTAGACTAGCTATAAGACCCGATGCATTTCTCTAGTTGAGTTTATTGAGTTGCCTGGGAATAATGGCCAATAATGCAGGTTatggaatgtactgtatatgttatTATTTTTATGTTATTCCCATGCAATAGGagatatgaaatatattttgctcAGATAATTCACAGGCCatttagagttcctctgtccagtgttcttttgcccatcttaaacttttatttttattggcctgtgtgagatatggctttttctttgcaactctgcctagatggccagcatcccgga

Function

NR:

description
interferon alpha/beta receptor 1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578981.2 True 4944 mRNA 0.42 6 12855630 12867235

Neighbor

gene id symbol gene type direction distance location
ifngr2b LOC106581880 coding downstream 19117 12830038 ~ 12836513 (-)
LOC110501418 NA coding downstream 43180 12806707 ~ 12812450 (-)
LOC110501413 LOC106581899 coding downstream 138978 12684208 ~ 12716652 (-)
LOC110501414 LOC106581900 coding downstream 171655 12648341 ~ 12683975 (-)
LOC110501412 LOC106581902 coding downstream 219593 12627375 ~ 12636037 (-)
crfb5 LOC106581895 coding upstream 1284 12868519 ~ 12887935 (-)
LOC110501423 LOC106581741 coding upstream 34740 12901975 ~ 12912654 (-)
LOC110501424 i20ra coding upstream 45526 12912761 ~ 12919173 (-)
LOC110502048 NA coding upstream 60967 12928202 ~ 12935504 (-)
LOC110501425 LOC106581740 coding upstream 75316 12942551 ~ 12952097 (-)
G1777785 NA non-coding downstream 25753 12827037 ~ 12829877 (-)
G1777781 NA non-coding downstream 67013 12788130 ~ 12788617 (-)
G1777743 NA non-coding downstream 94543 12753586 ~ 12761087 (-)
G1777848 NA non-coding upstream 51987 12919222 ~ 12919556 (-)
G1777853 NA non-coding upstream 59871 12927106 ~ 12927330 (-)
G1777861 NA non-coding upstream 65630 12932865 ~ 12933125 (-)
G1777883 NA non-coding upstream 120824 12988059 ~ 12988548 (-)
LOC110501411 LOC106581904 other downstream 230936 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 585516 12268217 ~ 12270114 (-)
G1777286 NA other downstream 814008 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 1012571 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 3117774 9635535 ~ 9737896 (-)
G1778140 efnb2 other upstream 301545 13168780 ~ 13172979 (-)
G1778224 NA other upstream 412045 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 2700268 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 2818621 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 4189887 17057104 ~ 17063550 (-)

Expression


Co-expression Network