LOC110501424 (i20ra)


Basic Information

Item Value
gene id LOC110501424
gene name i20ra
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12912761 ~ 12919173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578986.2
CACCTTTACATAATGACAGCAGCAGCTCCTTGCCCCAGCTCATTGCACTCTAACCCCGAGACACACGACCAGGCCTGCCATCCTACACAGCTACCACTGGACTGACCTGACCCAATCTGAAAGATGGGGCCTTGGACCCTGCTGCTCCTGCACCTACCCCTGGTGGTGTCCATGCTCCCAGCCCCTACCAACGTGTCCATTGTCTCCTTCAACTTGGAGCACACTCTGACCTGGCTGCCAGGTCCAGAGACTCCTGACAACACACATTTCACAGTTCAGAGCCTCAGGAAGAACTCATGGCAGCTCGTGAAGGGTTGTGCTAGGTTGAAGACCCGCCAGTCATGTGACCTCACTAACACATTCAAGGATCCCTTCTATCATTACAAAGCCCGTGTTCAAGCCATCACCACTACTCAGAAGTCCAACTGGTCCCTCTCTATGCTCTTCTACCCCTTGACTGACACATTGCTGGGCCCTCCAGTGGTGTCCGTGTCCGGCTGTGGGAACTGCCTGCTCCTGCAGGTAACTCCCCCCACATCCAGGGGCCTGCAGCGCTCCCTGTCCCCCACACAGCTCTACTACAGACAGTTCACTTGCAAGGTGCGCCGGACCAGGGATGGATCTCAGTTCAGCATGTGGGTCACCTCCACTGAGAAAACTGTGATTGGCTACCTGGAGCCAGGGGCGGAGTATTGCGTGACTGTCACCCCATCTACGAGCTTTAACCCTCACTCTGTCCCCTCTGAGCCCCACTGTGCCTTCACCAGCCCTACTGCTGCCAACACAGtcctctgttcctctctgtggtGGTTAGATACCCACAGATCCCTAGCCTGACCCCTTCAACCTGCTCTCAGTCCTGCCTGTAGTTGGACCCCCATCACCATGACTTTGTCCCTCCCAGGCCATACACAGGGGAGGAGACGTGTCAAGGAAGAAGATGATGATGCAGTTTACTCTGGGCTATGGACTGGTGGTGGTCTCCTCGAGATCAAATAAATATTTAACCCACAATTATCCAGTGATAAGATTATAACAACCCATTGCTTTATATTTATGTCTGAGTCATGACAAagttatattattattttattgtgaaTAAAGCTACTTTGTGATTGATtataacatgtaaaaaaaaaaaaggcataagcaaaaacaaaatgtgaaatgtaTGTCGATTTTTCTATAAATGTATTGAACTATGTCCTATTCAACAAGTAGTTGAGGTTTCATTATAGACCTGTAATAAAAGGAGGAAATTGAA
>XM_021578985.2
TACACCTTTACATAATGACAGCAGCAGCTCCTTGCCCCAGCTCATTGCACTCTAACCCCGAGACACACGACCAGGCCTGCCATCCTACACAGCTACCACTGGACTGACCTGACCCAATCTGAAAGATGGGGCCTTGGACCCTGCTGCTCCTGCACCTACCCCTGGTGGTGTCCATGCTCCCAGCCCCTACCAACGTGTCCATTGTCTCCTTCAACTTGGAGCACACTCTGACCTGGCTGCCAGGTCCAGAGACTCCTGACAACACACATTTCACAGTTCAGAGCCTCAGGAAGAACTCATGGCAGCTCGTGAAGGGTTGTGCTAGGTTGAAGACCCGCCAGTCATGTGACCTCACTAACACATTCAAGGATCCCTTCTATCATTACAAAGCCCGTGTTCAAGCCATCACCACTACTCAGAAGTCCAACTGGTCCCTCTCTATGCTCTTCTACCCCTTGACTGACACATTGCTGGGCCCTCCAGTGGTGTCCGTGTCCGGCTGTGGGAACTGCCTGCTCCTGCAGGTAACTCCCCCCACATCCAGGGGCCTGCAGCGCTCCCTGTCCCCCACACAGCTCTACTACAGACAGTTCACTTGCAAGGTGCGCCGGACCAGGGATGGATCTCAGTTCAGCATGTGGGTCACCTCCACTGAGAAAACTGTGATTGGCTACCTGGAGCCAGGGGCGGAGTATTGCGTGACTGTCACCCCATCTACGAGCTTTAACCCTCACTCTGTCCCCTCTGAGCCCCACTGTGCCTTCACCAGCCCTACTGCTGCCAACACAGtGCCTGTGGTTCTGAGTGTACTGTGTGCCTTTAGCCTCCTGGTGGTGCTCCTCTGTGGAATAGTGGTCTATAGTGGTCGCCTGCTCTGTATGCACAAACCTCTCCCCAAAACACTGtcctctgttcctctctgtggtGGTTAGATACCCACAGATCCCTAGCCTGACCCCTTCAACCTGCTCTCAGTCCTGCCTGTAGTTGGACCCCCATCACCATGACTTTGTCCCTCCCAGGCCATACACAGGGGAGGAGACGTGTCAAGGAAGAAGATGATGATGCAGTTTACTCTGGGCTATGGACTGGTGGTGGTCTCCTCGAGATCAAATAAATATTTAACCCACAATTATCCAGTGATAAGATTATAACAACCCATTGCTTTATATTTATGTCTGAGTCATGACAAagttatattattattttattgtgaaTAAAGCTACTTTGTGATTGATtataacatgtaaaaaaaaaaaaggcataagcaaaaacaaaatgtgaaatgtaTGTCGATTTTTCTATAAATGTATTGAACTATGTCCTATTCAACAAGTAGTTGAGGTTTCATTATAGACCTGTAATAAAAGGAGGAAATTGAA

Function

NR:

description
interferon alpha/beta receptor 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578986.2 False 1264 mRNA 0.49 6 12912761 12919171
XM_021578985.2 True 1382 mRNA 0.50 7 12912761 12919173

Neighbor

gene id symbol gene type direction distance location
LOC110501423 LOC106581741 coding downstream 107 12901975 ~ 12912654 (-)
crfb5 LOC106581895 coding downstream 24826 12868519 ~ 12887935 (-)
LOC110501422 LOC106581896 coding downstream 45526 12855630 ~ 12867235 (-)
ifngr2b LOC106581880 coding downstream 76248 12830038 ~ 12836513 (-)
LOC110501418 NA coding downstream 100311 12806707 ~ 12812450 (-)
LOC110502048 NA coding upstream 9029 12928202 ~ 12935504 (-)
LOC110501425 LOC106581740 coding upstream 23378 12942551 ~ 12952097 (-)
LOC110501426 LOC106581739 coding upstream 44216 12963389 ~ 12975845 (-)
LOC110502113 NA coding upstream 919291 13838464 ~ 13843329 (-)
nepro nepro coding upstream 1201634 14120807 ~ 14127458 (-)
G1777785 NA non-coding downstream 82884 12827037 ~ 12829877 (-)
G1777781 NA non-coding downstream 124144 12788130 ~ 12788617 (-)
G1777742 NA non-coding downstream 158331 12753768 ~ 12754430 (-)
G1777848 NA non-coding upstream 49 12919222 ~ 12919556 (-)
G1777853 NA non-coding upstream 7933 12927106 ~ 12927330 (-)
G1777861 NA non-coding upstream 13692 12932865 ~ 12933125 (-)
G1777883 NA non-coding upstream 68886 12988059 ~ 12988548 (-)
LOC110501411 LOC106581904 other downstream 288067 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 642647 12268217 ~ 12270114 (-)
G1777286 NA other downstream 871139 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 1069702 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 3174905 9635535 ~ 9737896 (-)
G1778140 efnb2 other upstream 249607 13168780 ~ 13172979 (-)
G1778224 NA other upstream 360107 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 2648330 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 2766683 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 4137949 17057104 ~ 17063550 (-)

Expression


Co-expression Network