LOC110502048


Basic Information

Item Value
gene id LOC110502048
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12928202 ~ 12935504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502048
ATGTGGATGGCCAACGAGATGTCTACGACAGGTTCAGCTACAAAGGCCACATCAGACGCAAACCGCAACAGGGATGGCGCAACATACTTTGTGGACAAGGTGTCTCTGAAGGGTAAGACTCCCAGCAGAAAGTACTGTGTCTCCGAAAGGGTCTTAGGCGGCCCAGAGAGACGCAGCAGGAACTCGTCCTCCAGCCAACCACACTGTAGCTTCACTACTTCTAAGTACACCGCAGATTATCACGAGGGACATTCAAGGCAGAACAACATTGTTGTGGatggaattgcagaatctccgCATGAGATCTGGATGAAGTCTGACGACAAAGTGATGGAAATTATCTCTGAGAAACTGAagctggaccacaggaagattgaggtggagcgcgCACACAGGATTGAAAAAccggcccagCAACACCAGGAGAACCTGCTTCCGGTGTCCTCAGTGCATTTAGTTCCACTATCGTCACCTTCGGGAAGCAGTGGAAAGGATGGAGAGAGTAAGGACGGCAGTGAGGCAGTGATCGAGATGGAGGGGAAGATAAatagtgggggaggaggagggcacGAGACACGAGGGGCCGCTGTCGATCTGTCctctctcaaccccctctcctcttcctcctcttctttctctaaAACCGAGGTGCTCCTACCCCATCCAAAAACACTCTCCGGCCTATCCCACTGTCCCGTCCACAGAGCTTAAGACCACCTCTGAGACAGTGTCCAACCGCCCTCAATGTCCTCTCTTCATAACGCAAGACCAACAAGGTGAATCTCTGCTTAGACCTGACTGCCTTTCAATGTCCACATCAAACAACTGTCAACTATCTGTGTCCTCACAAACCAGTCAACTTCCAGAGCCAGCCAAGTGTGGTTCATTGGGACAGGACTTGAGCTTCAGTCttttctcagagagagagagactacatggACCGTAGAGGGATTACAGCAgatgaaagaggaggaagggagcggTCACGTGATGATGTGGCTTTTCAtatgtgaaaacgtgtttttggaacactttgtgacatttcaaaacacttcatatGTTCCTAACAGTGTAGTTTCATGCTTtcacatgatttcatatgtgaaaTGTCACATATTTCACGTATGCTtcaacatgtgataacatgaaactacactGTTAGCCATTGCTGTAAATTTAGTGGTACATTTTATAGTCATTATACGGTAGATTtttacagtaatatacactacctgtcaaaag
>TU2035836
GTAATATGCCAACCTCATAGTgggcctttaaaaaaataaaagcctGGTTGCACAGCAGTCACTAAGCTAGTTtgtccctctgtttcctgtagccCACCTGGATCTACCCTTGGTGAGTGAGAGCCTGTGACAGCACTCTGTGTGGACCTGAGGCCTCATGTGGATGGCCAACGAGATGTCTACGACAGGTTCAGCTACAAAGGCCACATCAGACGCAAACCGCAACAGGGATGGCGCAACAGTAAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502048 False 1242 mRNA 0.51 4 12928202 12935347
TU2035836 True 249 lncRNA 0.51 1 12935256 12935504

Neighbor

gene id symbol gene type direction distance location
LOC110501424 i20ra coding downstream 9029 12912761 ~ 12919173 (-)
LOC110501423 LOC106581741 coding downstream 15548 12901975 ~ 12912654 (-)
crfb5 LOC106581895 coding downstream 40267 12868519 ~ 12887935 (-)
LOC110501422 LOC106581896 coding downstream 60967 12855630 ~ 12867235 (-)
ifngr2b LOC106581880 coding downstream 91689 12830038 ~ 12836513 (-)
LOC110501425 LOC106581740 coding upstream 7204 12942551 ~ 12952097 (-)
LOC110501426 LOC106581739 coding upstream 28042 12963389 ~ 12975845 (-)
LOC110502113 NA coding upstream 903117 13838464 ~ 13843329 (-)
nepro nepro coding upstream 1185460 14120807 ~ 14127458 (-)
tex30 LOC106581745 coding upstream 1192244 14127591 ~ 14131604 (-)
G1777853 NA non-coding downstream 872 12927106 ~ 12927330 (-)
G1777848 NA non-coding downstream 8646 12919222 ~ 12919556 (-)
G1777785 NA non-coding downstream 98325 12827037 ~ 12829877 (-)
LOC110501418 NA non-coding downstream 115790 12806707 ~ 12812450 (-)
G1777883 NA non-coding upstream 52712 12988059 ~ 12988548 (-)
G1777896 NA non-coding upstream 72499 13007846 ~ 13008220 (-)
G1777898 NA non-coding upstream 75434 13010781 ~ 13011030 (-)
G1777934 NA non-coding upstream 108696 13044043 ~ 13044267 (-)
G1777950 NA non-coding upstream 119385 13054732 ~ 13055094 (-)
LOC110501411 LOC106581904 other downstream 303508 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 658088 12268217 ~ 12270114 (-)
G1777286 NA other downstream 886580 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 1085143 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 3190346 9635535 ~ 9737896 (-)
G1778140 efnb2 other upstream 233433 13168780 ~ 13172979 (-)
G1778224 NA other upstream 343933 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 2632156 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 2750509 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 4121775 17057104 ~ 17063550 (-)
G1777861 NA non-coding downstream 2131 12932865 ~ 12933125 (-)

Expression


Co-expression Network