LOC110501444 (scrn3)


Basic Information

Item Value
gene id LOC110501444
gene name scrn3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14565191 ~ 14570768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579011.2
TCTCTGAGTGCGTGACCTCTGACGTACAGTGAGGCAGTCACAACATTAATTGTGCGCACTTGTGAAATCTGGTAAAGATTgaaataaaagtgaaagtaaGGACGAAAGTTTATAGTTTAATGAATCAGGGGGATACTTAAAACATTTCAATTCTCGGCTACAATTTGTGATCCGCTACTTGACTGCGGTGACAGAATGTACCCATCTTCCTGTGACACCTTTGTGGCTCTGCCCCCTGCCACCCAGGGACAGCGCATCGTCTTCGGAAAGAACTCCGACAGGCCCTGTGATGAGGTCCAGGAGGTGGTCTACTTCCCTGCAAGAGACTACAATGCAGGAGAAAAAGTTGAATGCACGTACATCGAAATTGAGCAGGCAGCCCATACCAATGCGGTTGTGCTTAGCAGACCAGCCTGGTTGTGGGGGGCTGAGATGGGGGCTAACGAGCATCAGGTGTGCATCGGAAATGAGGCAGTTTGGGGCAGAGAGAGTGCTGAGGATGAGGAGGCCCTTCTTGGCATGGATTTTGTCAGACTTGGTCTGGAGAGAGCAGAGACTGCTCAGAAGGCTGTGGATGTTATTGCTGAGCTGCTGGAGAAATATGGCCAGGGAGGAAACTGCATGGAGGACCAGTGTGGCTTTACCTACCACAACAGCTTCCTCATCTCCGACAGGACTGAGGCCTGGGTGATGGAGACGTCTGGGAAGTACTGGGCAGCAGAGAAAGTGGGAGATGGATATCGTAATATCTCCAATCAGTACTCCATAACAACCAAGATAGACAAGGAACACCCTGGGATGAGGGAGTATGCCAAGAGCCATGGCTGGTGGGATGGGAAGGCCCCGTTCAGTTTTGCTGAGACGTACTCTTTCATGACTACAGCCAGAATAGAGGCGTCTGGCAGCAGATACTGCGAAGGACGGAACCTACTAGAGCGAAGTAAAGGACACATCACAGCTGAGACAATGATGGAAATCCTGAGGGACAAGGAGAGTGGCATCAACATGGAGGGGATGTTCATGACAACAGGAAGCATGGTGTCTGTCGTACCAACAGACTCCACCCTGCCAGGGGTGCACTACTTCACTGGAACACCTGACCCTGAGAGGTCTGTTTTCAAACCTTTCATCTTTGTGAAAGACATTAAACAGTTGAAGCAAACTAGCTCGCCCTGTTATGGCCCTGATGACCCTGTGAAGAAGATACCCCGTTTCCAGAGCAAGCCAGATCGCAAACATCCACTGTTTATCAAACACGAGGTGGTGGCTGCAATCATTGACAGCACCAAGgaCAAAGGAAAGAAGATCATGCAGAATATGAGAGTGTTAGAAAAGGAGAAGATGGCTGAGATGGAGAAACTTTTATCAAGTGGTATGGAAGACCCGACTTCAGTTGTGCACCTGTTTTCTAACTCAAGCCAGGAAGAACTGAGCGTGTACAGTAACATTTAGTGGGATCTTTCATATTGGAATGACAAGGGGTTGTTTCAAGATCAATCCCCAGCATGCAATCATTTCACTACATTGTAACAGTAAATGGTAGTTTCACAAATTGCTGCTCATCAGTAAAAAGTATTAATACATCTGG

Function

symbol description
scrn3 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN3 (secernin 3).

NR:

description
secernin-3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG:

id description
K14358 SCRN; secernin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579011.2 True 1588 mRNA 0.48 8 14565191 14570768

Neighbor

gene id symbol gene type direction distance location
gtf2e1 gtf2e1 coding downstream 76066 14443528 ~ 14489125 (-)
stxbp5l stxbp5l coding downstream 172964 14157194 ~ 14392227 (-)
poglut2 kdelc1 coding downstream 408480 14132159 ~ 14156711 (-)
tex30 LOC106581745 coding downstream 433587 14127591 ~ 14131604 (-)
nepro nepro coding downstream 437733 14120807 ~ 14127458 (-)
sp9 LOC106581755 coding upstream 12380 14583148 ~ 14588361 (-)
LOC110501449 LOC106581758 coding upstream 164540 14735308 ~ 14738738 (-)
LOC110501448 LOC106581757 coding upstream 173003 14743771 ~ 14793451 (-)
rapgef4a LOC106581759 coding upstream 222966 14793734 ~ 14841276 (-)
LOC118943730 NA coding upstream 251678 14822446 ~ 14822500 (-)
G1780050 NA non-coding downstream 33143 14531052 ~ 14532048 (-)
G1779997 NA non-coding downstream 142333 14422622 ~ 14422858 (-)
G1779996 NA non-coding downstream 143313 14421497 ~ 14421878 (-)
G1779995 NA non-coding downstream 145774 14419206 ~ 14419417 (-)
G1779863 NA non-coding downstream 261710 14198778 ~ 14303481 (-)
G1780242 NA non-coding upstream 327139 14897907 ~ 14898135 (-)
G1780243 NA non-coding upstream 330566 14901334 ~ 14901540 (-)
G1780264 NA non-coding upstream 369086 14939854 ~ 14940056 (-)
LOC110501455 LOC106581768 non-coding upstream 445387 15016155 ~ 15043883 (-)
G1780892 NA non-coding upstream 585105 15155873 ~ 15156151 (-)
G1778224 NA other downstream 1234696 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 1392212 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 1940497 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 2295077 12268217 ~ 12270114 (-)
G1777286 NA other downstream 2523569 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 996735 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 1115088 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 2486354 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 3298761 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 4604799 19175567 ~ 19179266 (-)

Expression


Co-expression Network