sp9 (LOC106581755)


Basic Information

Item Value
gene id sp9
gene name LOC106581755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14583148 ~ 14588361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579010.2
CGAGCCAAGAGAGAAATCGTGTGACTACGAAAAAGCACAGTGCCTGAGTCGAATTGGAAAAGTACACTATTGCAGAATTTTGACCAATTCAACATAGCAAAGGCCCTGGATATGGCTACGTCTATACTTGGGgaagaacCACGATTTGGAACTACCCCTCTAGCTATGCTGGCTGCTACTTGTAACAAAATTGGCAATACCAGTCCCCTTACCACTCTACCTGATTCCAGTGCGTTTTCAAAAGGCGGATTTCATCCTTGGAAAAGAACCTCCTCTAGTTGCAACTTGGGATCCAGTCTCCCTGGATTCACTGTAGCAACAAGCCGCGGATCGACCGGACTAACATCAACTACTGGCACAGGCAACAGCGCGTTCTGCTTAGCCTCCACCTCCCCGACCTCCTCTGCGTTTTCCACAGAGTACAGCAGTCTGTTTTCCAACTCTGCGAGCATTTCGTCCCAAGAGTCTGGGCAATCCGCCTTCATCTCCAAAGTCCACACATCAGCAGAAACCCTGTATCCGAGGGTAGGGATGGCACATCCGTATGAGTCGTGGTACAAGTCTGGTTTCCATTCAACCATCTCGGGCGATGTTACGAACGGAGCGTCCGCGTGGTGGGACGTTCACGCCAACCCTGGCTCATGGCTCGAGGTCCAGAACCCTGCAAGCTCACTGCAGACCTCCCTGCATTCCGGGACCCCCCAAGCCATACACTCTCAGCTCAGTGGCTATAACCCTGACTTCTCCACTTTGACACACTCGGCATTCAGCTCAACCGGTATAAGTCCCACGGCATCTCATCTCCTATCAACTGGCCAACACCTATTAACACAAGAGGGATTCAAAACAGTCATTCCATCATACACGGACGCCTCTGCCGCCAACGCTATGATTTCAGGTTCCAGTTCTGGTTCCTCAAGGTCATCCAGGAGGTACTCCGGCAGAGCCACATGCGACTGTCCGAACTGTCAGGAGGCTGAGCGGCTCGGGCCTGCAGGGGCCAGCCTACGGAGGAAAGGACTTCACAGTTGTCACATTCCTGGCTGCGGTAAGGTGTATGGCAAAACCTCTCACCTTAAAGCCCATTTGAGATGGCATACTGGCGAGCGGCCCTTTGTCTGCAATTGGCTTTTTTGTGGCAAAAGGTTTACAAGATCAGATGAACTTCAGAGACACCTCCGTACCCACACCGGTGAGAAAAGGTTTGCTTGCCCAGTCTGCAACAAGCGCTTTATGAGGAGCGACCATTTGAGCAAGCACATTAAAACCCACACTGCCGGCGGTGGAGAAGGTAAAAAGGGAAGCGACAGTGACACCGACACCAGTAACCTGGAGACCCCCAGGTCCGAGTCCCCAGAACTCATTTTAGACGGGGTAAACCCCAGAATCACGATCAAGGACCCATCTCCTCATGACGAGCCCTGAAGGCTGTTATTTGAATGACTTCGAAACCAACTTTATAAAGCAAATGACCAGTAGGCATCAAAACTGGCACATGTAATAAAAAACGGGCCTAAGGTTTGAGAGACAGTATTGGAGGAAACAATTATTTTAGGCAAAGCATTTGAAAACTAAAAATAATTAGATCTTACCACCATATTGATTGAATGTTCAACTCGTTATTAACCATCAAACGAAAAGCAGAATTATTCTATAGGCTATTGTAAGAAAATGACTATAAAGCTGTCAACTTAAAAATGAGCTGGAGGACATTTTAAACGGACCAGTGCGTAAAAGGGGTAAGTTAACCGAAATGAACTTGGTTGGCCCATGTGAGTCGCCATCATCTTGTACATATTGGCAACAAACAATGTGTTCTTTTCATGTAAATGTTAATTATGATTGTTTTATTCGTGTTTGGGATCCTGAAATTCAGGGAGTTTACTTTTAACGCACTTTGTGGATATGTATGTACACAGCTTTTTAAAAATTCAGTTAACCATTTAATTTCTTtgctaaaaatatataaatgtttaCTTGTATAAAATCACACGTACAAGCCTTTCATTTTGTCATAATTAAAATGATGTAAAATCTGAGGCAGTAGTCATgtgatgggaatgttttactatctTGTGTCCCATATTTGTTTTCATTATTccaaattaaaataaatgatGAAAAAGGGTAATTGATTTGATCGTAAATAAATACGATTGCCAAACGTAAAATGTAGATAAGCAAGAGTGTTCATTACATCAAATCAATCATATATTGCTGATATAGGCAATCGCACATAGACTTGCATTCTCTCTGAGGAATAAATCAATAGGCATAGTAAATGGCCGGAAAATACATTTCATGCCCAAATGAAAATCGTGTTAAATGGTATTAATTATGACTTGGAGCACATCGCAGCCCCCATGTGTCTTGTATTTGCGATTAGGGATTCGTGTCTTATCAAATATCTGATTAATCTCCGAGACAATCATTTGTTCAGCTTTACTTTATCTGGGGGCTTCCGAGGGGGTTTTGATGACAAAAGGACTCCtgaatatttattttaattgtcCAAATTAACTGCTTTAATTTGCATGTCAAACGGAAAGATTGCAGTCCAATAATAAGGACACAGCATCTCTAAGCTTTCCTAGAAACTATACACTTGATTTGATGTTATGggaactgtttaaaaaaaaaaaaaaaaaaggaaagaaGAAGGGGTAAAAAGCCATATGCAAATGTTGAATTTGAAATGCTCTTGTCGCGGCGCAGTCAAATGGTCCCTGCGTGTTATTTGAATATCAGTGGCCCCGTACTGAAAGGGTTCAAGGATGCTCTCTGAATTCTTTGTGCTTACCCAGTGCAGCGTCCGATCTCAAAGAAAAACCCGGGGAATAATTACAGCGTGAGCCCAGGCCTGGGAatacattagggagaggcatctCATCCAGACAACCTCTTCATGAAGAGGAAGTTCAATTGACCAGAAGGCAATGGAGGGAAATTATTTTCATTTCCTTTTGTGTGGCTGGGTTTAAAAGAGAGAGATCAGGAAAATAACGACCAAAAATAACATTGACATGTTCTATAATGATCACCAAATTTGAGTTCACGAATAAACAACTAAAACTGAAGACTAAAATGCCTAAAAAAAACAAAGGCATATATCATATATTTAGCATTTAATATCAATGTGACATTTTAAATGCGCAGGCATGATTTAAAATAAAATAGACCCATTCAAAATCAGGCTACTATAATATAGACTAACAAATAATACATCAATGCAACCCGCAGTTGCAAGTGtgcttattttttaaattataaattAGCTGTTTATTTGCAGTGACTTTCTGAtgttattttttcttcttctggaaAATATTTTTCATAAAACATTTAGTATTATACTGTAAATCATTAACATAGTTTGCAATTATATGGCTACAATAGGTGGTTCAAATCAAAACGATAAGTGCGTCCAAATGCTTTTGGGAGAGAGACGCCTGGTGTTGCGGACAGTAAGTGCTGTCAGTTAGCGCTTTGTTGCTTTCCCTGGAATGCCCTCTCACTGAGCATTAGGCAGAAGTCATCTTTGTTTTCAAGCCACAATAAAAGAGAGAGATCAAAGAAGAGAACCAGTGCGACGTTACGGGACACATTTCGCTGCTAAAGGGCTCACGCCATTCTCCTCGTCCCCAGGGTAAAAACAATGTCCGTCATCTCACAATGGAAGATGGCAAAAATATTTTTCTTGTGATAATGACAAAATTACAATTAATCAAACCAATTGGATAGCCTAAAGCATTTGAAGTATAGGCTTATAGATGCACACCTCCCTGCATTATTGGAGGTAAATTGGCTACACAGAATATACAAATCTGAAGCGACTGAAACAAAACGTGCAAGTAATTCTCGACTTTTTTTTATCAGGAATGATCAAAGCATATCATATCGACATTAGTTATCCATCTAAGCTAATTGCTATGGCTTTTCCAAAAATATATGGCTCCCAAACAAATACGGACTCGTAGGTTACACTGTTCATTAGGTCAAATGAACCCCAATGACCTCATGGTTTCTTCGGTTTTGTCCATCATGGTGATCTTGTCATGCAGGCAGCTTACAAGTAATATCTAAAGGCCAATAGGCACGCAGTGTTGTGTAAATCATGCATTGAGTTTTACACTAAAGGTAAAATTACATGCATCGACTTCAATTCGGAATTGGGTCTTCAGTGTTAAACATTTGAAACAAACTTGAGTTCTACACACTAATCACGTATGCAGGCATACTCATATGGATCGCATAGGCTACTGAACACTCAAGAGATTGAATGTCATTAGTCAACCATGCTCCTGTTTAGGGCACTTGTTGCAAAATACCATTGTGAAACAAGCTACATAATTAGGCTAGACTTGTAACAAATGTGATGAAACACGGTTACAAGCATGTGGGAACATAACagtttcccactgggcacagacacaatttgttttgttcagtaatgTCTAGttctgatttacatttggttgagttgtcaactaatgtgataTAAACAAAACAATTTACCATGCCATTTGATTTAGggtaaaagttgggtgaaaaaaataccaAATCCATTACTTTGACAATCAGTTTTCGACGTTGGTTCAACGTCACATAATGTTGTTGTTTAAATAACATTgattcaaa

Function

NR:

description
transcription factor Sp9

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09199 SP9; transcription factor Sp9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579010.2 True 4638 mRNA 0.41 2 14583148 14588361

Neighbor

gene id symbol gene type direction distance location
LOC110501444 scrn3 coding downstream 12380 14565191 ~ 14570768 (-)
gtf2e1 gtf2e1 coding downstream 94023 14443528 ~ 14489125 (-)
stxbp5l stxbp5l coding downstream 190921 14157194 ~ 14392227 (-)
poglut2 kdelc1 coding downstream 426437 14132159 ~ 14156711 (-)
tex30 LOC106581745 coding downstream 451544 14127591 ~ 14131604 (-)
LOC110501449 LOC106581758 coding upstream 146947 14735308 ~ 14738738 (-)
LOC110501448 LOC106581757 coding upstream 155410 14743771 ~ 14793451 (-)
rapgef4a LOC106581759 coding upstream 205373 14793734 ~ 14841276 (-)
LOC118943730 NA coding upstream 234085 14822446 ~ 14822500 (-)
LOC110501452 LOC106581763 coding upstream 315283 14903644 ~ 14934324 (-)
G1780050 NA non-coding downstream 51100 14531052 ~ 14532048 (-)
G1779997 NA non-coding downstream 160290 14422622 ~ 14422858 (-)
G1779996 NA non-coding downstream 161270 14421497 ~ 14421878 (-)
G1779995 NA non-coding downstream 163731 14419206 ~ 14419417 (-)
G1779894 NA non-coding downstream 331927 14250704 ~ 14251221 (-)
G1780242 NA non-coding upstream 309546 14897907 ~ 14898135 (-)
G1780243 NA non-coding upstream 312973 14901334 ~ 14901540 (-)
G1780264 NA non-coding upstream 351493 14939854 ~ 14940056 (-)
LOC110501455 LOC106581768 non-coding upstream 427794 15016155 ~ 15043883 (-)
G1780892 NA non-coding upstream 567512 15155873 ~ 15156151 (-)
G1778224 NA other downstream 1252653 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 1410169 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 1958454 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 2313034 12268217 ~ 12270114 (-)
G1777286 NA other downstream 2541526 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 979142 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 1097495 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 2468761 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 3281168 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 4587206 19175567 ~ 19179266 (-)

Expression


Co-expression Network