LOC110501449 (LOC106581758)


Basic Information

Item Value
gene id LOC110501449
gene name LOC106581758
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14735308 ~ 14738738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579022.2
GCACAAAAATAAAGGTGTCCACCAGCAGTATTTTCTAAAGACTTTTTTCAAATTTTATGTGGCGTATATTTGTGGATTATATTTTTCTTTTAGACCGTCTTTTGAAACAAAAGTTTATACACCTTTCAGGACACTTTACTGGCGCGGGAAATTTCTCAGCCAACATCTGCTAGTCCGAATTTTGGTGGGGTTTCTCTGTATTCATAAAAGGACTGGAGAAACGTGTACTTGAGTTTTGACTGAATTTCTTTGTAGAAAACTTTATAGAAAACAAAATGCGTCCATCTGGctctaagCGTCAGCAGGCCCCCCAGCCTCCCTCCACCAGGATGGGTTTGCGGAGTTTCCGTAATGTACCTCTGGTGCCCATGGAGACATCCtcttcttcatcagatgacagttgTGACAGCTTTGGCTCTGACGGTGGCTTTGCTAACACGAAAAGTAGCTTCAGAGAAGCTAAGAAGGTGGCGGAGAGAGCCAAGGTGTTTGAGGCCAGCTCGGAGGGAGAGTCTCTCAGTGGGTTTGAGAATGCCTTCAGCAGTGAAATGAGTGCCATGAGAGTGGACTCTGACTCTGAGGAGTCGGTGACGCCGCGGAAGAGGGGCCGCCGGTCACAAACTCTGAAAGTGGCCATGAAATTCCCCACCAGGCGGGCCAGCCAGAAGAAGAGTTTTGCAGCAGAGCCCCCTAAACAGCCCAAAGTCGCTCCCAAACAGACCACTGGGGAGGGAGACAACTTCATGGACAAGAGAGCGCTTAACATCCGGGAGAACAAAGCCATGCTTGCAAAGCTGATGGCAGAACTCGACAAAATACCTGGCTTCCCTAGAAGAACGTCCCTGCCCATGATGAATGCGCCCTGTCGCACCACTCGCCGGTCTCAGGGAGCCCCTGGACCCCGCAGGAGGAACCCTGAGCGTACCTCTCGGCCCCACACTCGCTCCCGCTCCCTGGTGGACGGCCCCCcatcagaggaggaagaggaggacaaatTCAGCCTGGTGCGCAGGAGCTGCTACTACGAGGAGAAAGCGCCCCGTCGGCGCAGCTACAACGGGGTGCAGGCCTTTCCTCATGTGGTGCGGCCTGTGAAGGACATCACCCAGAGGGAGCTGGATCTGATCGCAGACAACGTGCGGGAGAAGGTCTACAACAGCTCCACTGGGTCCACTTGCCATCAGTGCCGGCAGAAAACGGTCGACACCAAGACCAACTGCCGTAACCCAGAGTGTGTGGGGGTGAGGGGTCAATTCTGTGGCCCGTGTCTCCGTAACCGCTACGGAGAGGAGGTCCGAGATGCCCTGCTGGATCCTGAGTGGGAGTGTCCGTCGTGCAGAGGGATCTGCAACTGCAGCTTCTGTAGAGCCAGAGAGGGTCGCTGTGCCACTGGAGTTCTGGTCTACCTGGCTAAATACCACGGCTACGACAACGTCCATTCTTATCTCAAGAGtctgaaGAAGGAAATGGAAGAGAGCCAGTAAACCGTGGAGAATGTAACCGGATTCTGAACCTGACTGACGATGATGTGATGTGGCTTTTATATTCCGTAATGCAAAACAGTAGATTTTTCTATTGCTCCTGATTCTGAAAATGTTTACATTGTTTTAAATGTGTACAGTTTTGCTGTCAATTACGTGAGTGGTACGTTTATACTGTGATGTTTGCCTGTGACATTCACACTTTTAACCTGTAAGTTTGGATAAAAACTATATGTATAAATTGGTTGTCCTCTGT

Function

NR:

description
cell division cycle-associated protein 7-like

GO: NA

KEGG:

id description
K23408 CDCA7, JPO1; cell division cycle-associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579022.2 True 1737 mRNA 0.51 10 14735308 14738738

Neighbor

gene id symbol gene type direction distance location
sp9 LOC106581755 coding downstream 146947 14583148 ~ 14588361 (-)
LOC110501444 scrn3 coding downstream 164540 14565191 ~ 14570768 (-)
gtf2e1 gtf2e1 coding downstream 246183 14443528 ~ 14489125 (-)
stxbp5l stxbp5l coding downstream 343081 14157194 ~ 14392227 (-)
poglut2 kdelc1 coding downstream 578597 14132159 ~ 14156711 (-)
LOC110501448 LOC106581757 coding upstream 5033 14743771 ~ 14793451 (-)
rapgef4a LOC106581759 coding upstream 54996 14793734 ~ 14841276 (-)
LOC118943730 NA coding upstream 83708 14822446 ~ 14822500 (-)
LOC110501452 LOC106581763 coding upstream 164906 14903644 ~ 14934324 (-)
LOC110501454 LOC106581767 coding upstream 236600 14975338 ~ 14980745 (-)
G1780050 NA non-coding downstream 203260 14531052 ~ 14532048 (-)
G1779997 NA non-coding downstream 312450 14422622 ~ 14422858 (-)
G1779996 NA non-coding downstream 313430 14421497 ~ 14421878 (-)
G1779995 NA non-coding downstream 315891 14419206 ~ 14419417 (-)
G1779894 NA non-coding downstream 484087 14250704 ~ 14251221 (-)
G1780242 NA non-coding upstream 159169 14897907 ~ 14898135 (-)
G1780243 NA non-coding upstream 162596 14901334 ~ 14901540 (-)
G1780264 NA non-coding upstream 201116 14939854 ~ 14940056 (-)
LOC110501455 LOC106581768 non-coding upstream 277417 15016155 ~ 15043883 (-)
G1780892 NA non-coding upstream 417135 15155873 ~ 15156151 (-)
G1778224 NA other downstream 1404813 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 1562329 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2110614 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 2465194 12268217 ~ 12270114 (-)
G1777286 NA other downstream 2693686 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 828765 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 947118 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 2318384 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 3130791 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 4436829 19175567 ~ 19179266 (-)

Expression


Co-expression Network