LOC110501459 (LOC106581770)


Basic Information

Item Value
gene id LOC110501459
gene name LOC106581770
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15096036 ~ 15099690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579040.2
ACTCATGACCCCCCCCACTTGAAATTCCTCAAATCACTTCCTACATGAATCCAGTGTTGGCGTTCGCGCTGTTAGAGATGGCAATGGAGAATTTCAAGCAGTTCCTGTTCGCTTTGTCCGCTGCCGTTACCGTTGGTTTTGTCTCGATAATTTTTGTTTTGAGATGGGTATTCTACTTCAAGGAAGGTTTAGCATGGGATGGAGGACTGGCCGAATTCAATTGGCACCCGGTTTTAATCGTTACCGGGTTCATTTTTATGCAGGGAATTGAAGTAGGCCTACCTCATAGTGATGTAAGAAACAGGATGTTACAACATCTGCCATTATCGTGTATAGGTTGCCATGGACCTGGAAGTGCAGCAAGTTAATGATGAAGTTTATTCATGCTGGCTTAAACATACTGGCCTTCATTTTCGCTGCCATATCTCTGGTAGCAGTATTTGACTTCCACAACTCACAAAACATCCCCAACATGTACAGCCTGCACAGCTGGGTGGGGCTAGCAGCTGTGATACTATATTCACTACAGCTTGTCCTGGGAGTGTGTATATACCTGGTACCCATCACCCCGACATACCTGAGAGCAGCGTTTATGcccctgcacatctacagtgGCCTGTTCATCTTTACCAGTGTCATAGCCACTGCACTTATGGGCATCACAGAGAAGCTCATTTTTGGCCTGAAAAATCCCAGTTACAAAGACTCTCCCCCAGAGGCCACCTTTGTGAATGTGCTGGGAGTGCTTATAGTTATTTTTGGAGGAATCATCCTCTGGATCGCTACTCGCCCCTCTTGGAAACGCCCCAGTGAGCAGGTCCTGCGCTCCCCGCCTACTAACGGGGGTGGGTCAGTTGGCATCAAAGTGTCTCAACAAACTGACCCGATTGACCCCAAAGGCAATGGAGATACCAGGAGAAGGAGTGGTAAATTGGAGGACTCCGGACAGATCAACTGAGTAACATGAAATCCAACTGctgattctgtctgtctgttgatgCTTTAAAAAGTTGCATTTATCTACTGGCATTCCCTCAGCAAATGTAAACCTTTGTTCCAAATAGCACCTTGAGGAATTGTTTCCAACAGTTCCAGAATGTTGATCtttaaacagttttttttatttgatgtATTTGAATGTAATGGACAATGATTTGATAAAAGGATTGAACTAGCCTATTGAAGATTAGACAGATTATCaaatatactgagcaaaaatataaatgcaacaatgtcaaagattttactgagttacagtaaggaaatcagtcaatttaaataaattaggccctaatctatggatttcacatgactggaaatacagatatgcatctgttggtcacagatacctttttagtaggggcgtggatcagaaaaacagtatctggtgtgaccaccatttgtctcatgcagtaTGAAATCTCCTTCACATataattgatcaggctgttggttgtggcctgtagaatttgtcccactcctcttcaatggctgtgcgaagttgttggatactggcgggaactggaacacgctgtcgtacacgtcgatccagagcatcccaaacatgctcaatgggtgacatgtctggtgagtatggaggctatggaagaactgggacattttcagcttccaggaatgtagtacagatccttgcgacatggggccgtgcattatcatgaggtgatggcggcggatgaatggcatgacaatgggcctcaagatcttGTCACATAACCTCTGtgaattcaaattgccatcgataaaatgaaagtgtgttcgttgtccgtagcttatacctgcccataaATCTACCGCCACCATGTGGCACTttgttcacaactttgacatcagtAAACCACTTTCCCACATGATGCCATGAATGTGGTCGgcggttgtgaagccggttggacgtactgccaaattctctaaaacaacattggagaacgcttatggtagagaaataaacatgcaattatctggcaacggctctggtggacattcctgcagtcagcatgccaattgcacgctccctcaaatctgtggcgttgtgtgacaaaactgcacattttagagtggccttttattgtccccatcacaaggtgcacctgtgtaattagcTTTTTGTGTTCATGGAAAATTTCAAggaccttttatttcagctcatgaaatgttgcgtatatatttttgttcagtgtacatattCCTTACATTTGTGTAACTTTTATAATGATTACATACTGTATTCTTCagtgtttttattttcatttaagGCTAGATTTACAGAACAAACACATCTTTAGGTGTGAGGGGTGAATCCATTATAATccaaatatatgtattattacaTACAGGTCTACTTAAAGGCAATATAGGCAAACGCAAATCATTACTCTGTTCAATATACTATTGATTTAAATCAGTGAGGAATTCATGATTGCTGCTTAATAGTATTAAAGCATATTTTACAAATGA
>XM_021579039.2
AGTCTGTTCTGTCTGACCCATTTGTAACAACGGAGGTTCCAAAACTTTTTCAGATTTGTTATTGGAAAATAATTACTCATGACCCCCCCCACTTGAAATTCCTCAAATCACTTCCTACATGAATCCAGTGTTGGCGTTCGCGCTGTTAGAGATGGCAATGGAGAATTTCAAGCAGTTCCTGTTCGCTTTGTCCGCTGCCGTTACCGTTGGTTTTGTCTCGATAATTTTTGTTTTGAGATGGGTATTCTACTTCAAGGAAGGTTTAGCATGGGATGGAGGACTGGCCGAATTCAATTGGCACCCGGTTTTAATCGTTACCGGGTTCATTTTTATGCAGGGAATTGCCATTATCGTGTATAGGTTGCCATGGACCTGGAAGTGCAGCAAGTTAATGATGAAGTTTATTCATGCTGGCTTAAACATACTGGCCTTCATTTTCGCTGCCATATCTCTGGTAGCAGTATTTGACTTCCACAACTCACAAAACATCCCCAACATGTACAGCCTGCACAGCTGGGTGGGGCTAGCAGCTGTGATACTATATTCACTACAGCTTGTCCTGGGAGTGTGTATATACCTGGTACCCATCACCCCGACATACCTGAGAGCAGCGTTTATGcccctgcacatctacagtgGCCTGTTCATCTTTACCAGTGTCATAGCCACTGCACTTATGGGCATCACAGAGAAGCTCATTTTTGGCCTGAAAAATCCCAGTTACAAAGACTCTCCCCCAGAGGCCACCTTTGTGAATGTGCTGGGAGTGCTTATAGTTATTTTTGGAGGAATCATCCTCTGGATCGCTACTCGCCCCTCTTGGAAACGCCCCAGTGAGCAGGTCCTGCGCTCCCCGCCTACTAACGGGGGTGGGTCAGTTGGCATCAAAGTGTCTCAACAAACTGACCCGATTGACCCCAAAGGCAATGGAGATACCAGGAGAAGGAGTGGTAAATTGGAGGACTCCGGACAGATCAACTGAGTAACATGAAATCCAACTGctgattctgtctgtctgttgatgCTTTAAAAAGTTGCATTTATCTACTGGCATTCCCTCAGCAAATGTAAACCTTTGTTCCAAATAGCACCTTGAGGAATTGTTTCCAACAGTTCCAGAATGTTGATCtttaaacagttttttttatttgatgtATTTGAATGTAATGGACAATGATTTGATAAAAGGATTGAACTAGCCTATTGAAGATTAGACAGATTATCaaatatactgagcaaaaatataaatgcaacaatgtcaaagattttactgagttacagtaaggaaatcagtcaatttaaataaattaggccctaatctatggatttcacatgactggaaatacagatatgcatctgttggtcacagatacctttttagtaggggcgtggatcagaaaaacagtatctggtgtgaccaccatttgtctcatgcagtaTGAAATCTCCTTCACATataattgatcaggctgttggttgtggcctgtagaatttgtcccactcctcttcaatggctgtgcgaagttgttggatactggcgggaactggaacacgctgtcgtacacgtcgatccagagcatcccaaacatgctcaatgggtgacatgtctggtgagtatggaggctatggaagaactgggacattttcagcttccaggaatgtagtacagatccttgcgacatggggccgtgcattatcatgaggtgatggcggcggatgaatggcatgacaatgggcctcaagatcttGTCACATAACCTCTGtgaattcaaattgccatcgataaaatgaaagtgtgttcgttgtccgtagcttatacctgcccataaATCTACCGCCACCATGTGGCACTttgttcacaactttgacatcagtAAACCACTTTCCCACATGATGCCATGAATGTGGTCGgcggttgtgaagccggttggacgtactgccaaattctctaaaacaacattggagaacgcttatggtagagaaataaacatgcaattatctggcaacggctctggtggacattcctgcagtcagcatgccaattgcacgctccctcaaatctgtggcgttgtgtgacaaaactgcacattttagagtggccttttattgtccccatcacaaggtgcacctgtgtaattagcTTTTTGTGTTCATGGAAAATTTCAAggaccttttatttcagctcatgaaatgttgcgtatatatttttgttcagtgtacatattCCTTACATTTGTGTAACTTTTATAATGATTACATACTGTATTCTTCagtgtttttattttcatttaagGCTAGATTTACAGAACAAACACATCTTTAGGTGTGAGGGGTGAATCCATTATAATccaaatatatgtattattacaTACAGGTCTACTTAAAGGCAATATAGGCAAACGCAAATCATTACTCTGTTCAATATACTATTGATTTAAATCAGTGAGGAATTCATGATTGCTGCTTAATAGTATTAAAGCATATTTTACAAATGA

Function

NR:

description
cytochrome b reductase 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08370 CYBRD1, Dcytb; plasma membrane ascorbate-dependent reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579040.2 False 2471 mRNA 0.42 5 15096036 15099616
XM_021579039.2 True 2495 mRNA 0.42 4 15096036 15099690

Neighbor

gene id symbol gene type direction distance location
LOC110501457 dc1i2 coding downstream 7649 15065745 ~ 15088387 (-)
LOC110501455 LOC106581768 coding downstream 52153 15016155 ~ 15043883 (-)
LOC110501454 LOC106581767 coding downstream 115291 14975338 ~ 14980745 (-)
LOC110501452 LOC106581763 coding downstream 161712 14903644 ~ 14934324 (-)
rapgef4a LOC106581759 coding downstream 254760 14793734 ~ 14841276 (-)
LOC110501462 gors2 coding upstream 49152 15148842 ~ 15152914 (-)
LOC110501463 LOC106581773 coding upstream 66213 15165903 ~ 15187152 (-)
LOC110501465 LOC106581774 coding upstream 100682 15200372 ~ 15202635 (-)
LOC118936393 NA coding upstream 111786 15211476 ~ 15214654 (-)
LOC110502051 myo3b coding upstream 132137 15231827 ~ 15310852 (-)
G1780264 NA non-coding downstream 155980 14939854 ~ 14940056 (-)
G1780243 NA non-coding downstream 194496 14901334 ~ 14901540 (-)
G1780242 NA non-coding downstream 197901 14897907 ~ 14898135 (-)
G1780050 NA non-coding downstream 563988 14531052 ~ 14532048 (-)
G1780892 NA non-coding upstream 56183 15155873 ~ 15156151 (-)
G1780855 NA non-coding upstream 62270 15161960 ~ 15163276 (-)
G1780907 NA non-coding upstream 94336 15194026 ~ 15194281 (-)
G1780926 NA non-coding upstream 116944 15216634 ~ 15216871 (-)
G1778224 NA other downstream 1765541 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 1923057 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2471342 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 2825922 12268217 ~ 12270114 (-)
G1777286 NA other downstream 3054414 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 467813 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 586166 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 1957432 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2769839 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 4075877 19175567 ~ 19179266 (-)

Expression


Co-expression Network