LOC118936393


Basic Information

Item Value
gene id LOC118936393
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15211476 ~ 15214654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038963.1
tcggggattcaatcttgcaacatttcggttactagtccaactctctaactgctaggctacctgccacccagtgCAATTTGAATGCATCTCATTGTGTAGTGGTTATCCATTGGGGCTGTTACAGCACTGCGTATCAGTGTGGaattttgttttggttgttgttgttgttgtaagaggATCCCACTGGGTGCCatgtctctgtgctgtgtctgGGTGATTTGTCTCTGTTGCAGGTCCAGTGCTCAAGCTGCAGCAGCGAACCCCTCGCCGGCGGGGCCAGCAAACTGCTGAACAGCCCTGAAGACAGTCTCTATTACAACCAGCTAAATAGAAATCTGGATTACCAAGGGAGCAAGAGGAAGCTGAGAACTTGGCTAAATCCAAGTGCTGGACAGAGTACTACAAATTACTGTCACCGGTGGAGTCAATCCCCGAGGAAGGCTACTCCACTGGGGCCCCTCCCACCCTGTCAAGAGGGCCACTCTTCAGTCAGAACTGAGCTACAACCCCTGTCAACTAGTAAGAGTCAAAGAGCACTAGCCAGACACACACTGAAAGAACATTTCCTCCATATGCACCATGTATTACAAGTACCAGTGATGTACAACAAGAGACCAAAGCAAattatttttaattattattattatttatttattttaattatttttaagAATGACTAATGATGCTCCCCATGTACAGGTATGTGTGTATCTGGCTGATCATGAACTTTTCTCATGAATATAGTTCCGCTGCCATGTTGTACATCAGCAGTTCCTTGTACATTGACACCTCCCCCACACACCTCTCAATTTAGTCAGATAGGCTCCAGTAATGGAGGGATTAGTTATGGTGTCGTTCATTCCTCTTCTGGCTTGTTTTGAACAAATCTGGTTCACACAagagactcatgttaaaagaaaTATCATGACAAATCATGACAAAATGGTACAGATGTTGCATCCATACATTAAAAGTCAACGACAAATGCACGTTTGTGGGGAGAAAATGACAGCTGTTTAGCGGAAGAGGAAAAGACCAATGAAATCATATATTTTTCTTCTATGAAGTTTCATTGTCAGGGAATATTGTACAATAGACCCTGACTAAGACTCCCCTAACAGCAAGCTTGAGCCAAAGTAGATACTGTAGGAAAACAGCTCTatttagagaggaggggtggaaatcAGTCATGGAACCAGACTCTGAGAACTAGACATTTGCCCATCATCCTCAGTCTGTGCAGACCAGGGCTAGCATTCGAAAGGAGTAATAGTGTCATGATCGGTGTATCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTATCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTAGCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTAGCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTAGCAATTCTGTTGTCAAGTCCTCTCCCTGAAAAGCTGTATTGAGAACATAGAGGTATACTGCAATGTGAATAGTCAATGTTGTTATTTAACCCTTTGCGgttaattattcaacccctttcagTGAATTATTCAATAATGATTgtaatatgtttttttatttttatcattatACCCAGAGTGATCTATAGATGCTGTGTACTAGAATCTCCAAAAATTGTCTTTCACTGAAACAGAGCTAGTCGTAACTCTGAATTTCCCCCAAAGTATAAGAATTTCCTTTTAAGATGTGTCGGAAATGCGGGGCTGGCAAGTTGATTTGTAGTGGGGGGTAATTTGCATATCATTTACTGCATCTCCTTTTGTTGACACCCCAGGGCCCAAGCCAAGATTTTGATCTTAATAGGAAGAGTAGGGGGGtatgactagttaaataaaggttaaataaataaaataaataaaaatgactgAAGATCCCTTCCTCCTTATTCTTACTCAGTGAGAAACACATTAGAGCTCTGCCGAGATAGCAGGACCAGCCACAGTCAGTCCaggttctactctactctaattcCTTTGGGTTTTCAGAAGCCCTAGTTGGCCATCAGAGAGCAAGACTACTTACAATACGCGTCAGGACTAGGTCGAGTTGCATTCAGGTTTTGTGGGACTTTAAAGCTAACATGTTGTCTGGCTTTTTCACATTGTGAGACATACTGTACTAATATGTACTAATAATGTTATTCATACCTGCGTACAttttatttgccatatcttcaatctaagcctactagaaagtctGTGCCCTCATGCCTGGAGGGAAGCTAGAAGTAattctgctacccaagaatagtaaagccccctttactagTTCAATTAGCCGAGCAATCAGCCTGATACCAACCCTtcgtaaacttttggaaaaaattgtgtttgactagatacaatgctattttact
>TU2039143
GGGGAGAAAATGACAGCTGTTTAGCGGAAGAGGAAAAGACCAATGAAATCATATATTTTTCTTCTATGAAGTTTCATTGTCAGGGAATATTGTACAATAGACCCTGACTAAGACTCCCCTAACAGCAAGCTTGAGCCAAAGTAGATACTGTAGGAAAACAGCTCTatttagagaggaggggtggaaatcAGTCATGGAACCAGACTCTGAGAACTAGACATTTGCCCATCATCCTCAGTCTGTGCAGACCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038963.1 False 2401 mRNA 0.41 3 15211476 15214654
TU2039143 True 253 lncRNA 0.43 1 15212628 15212880

Neighbor

gene id symbol gene type direction distance location
LOC110501465 LOC106581774 coding downstream 8841 15200372 ~ 15202635 (-)
LOC110501463 LOC106581773 coding downstream 24324 15165903 ~ 15187152 (-)
LOC110501462 gors2 coding downstream 58562 15148842 ~ 15152914 (-)
LOC110501459 LOC106581770 coding downstream 111786 15096036 ~ 15099690 (-)
LOC110501457 dc1i2 coding downstream 123089 15065745 ~ 15088387 (-)
LOC110502051 myo3b coding upstream 17173 15231827 ~ 15310852 (-)
LOC110501466 ubr3 coding upstream 99505 15314159 ~ 15354447 (-)
LOC110501467 lab coding upstream 142196 15356850 ~ 15360327 (-)
klhl23 klhl23 coding upstream 146989 15361643 ~ 15365568 (-)
phgdh LOC106581777 coding upstream 151054 15365708 ~ 15379144 (-)
G1780907 NA non-coding downstream 17195 15194026 ~ 15194281 (-)
G1780855 NA non-coding downstream 48200 15161960 ~ 15163276 (-)
G1780892 NA non-coding downstream 55325 15155873 ~ 15156151 (-)
LOC110501455 LOC106581768 non-coding downstream 167820 15016155 ~ 15043883 (-)
G1780264 NA non-coding downstream 271420 14939854 ~ 14940056 (-)
G1780926 NA non-coding upstream 1980 15216634 ~ 15216871 (-)
G1780931 NA non-coding upstream 5031 15219685 ~ 15220181 (-)
G1780947 NA non-coding upstream 28860 15243514 ~ 15243823 (-)
G1780948 NA non-coding upstream 29223 15243877 ~ 15244111 (-)
G1778224 NA other downstream 1880981 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2038497 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2586782 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 2941362 12268217 ~ 12270114 (-)
G1777286 NA other downstream 3169854 12041108 ~ 12041622 (-)
G1781137 lrp2 other upstream 352849 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 471202 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 1842468 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2654875 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3960913 19175567 ~ 19179266 (-)

Expression


Co-expression Network