bbs5 (bbs5)


Basic Information

Item Value
gene id bbs5
gene name bbs5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15424718 ~ 15433882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958835.1
ctgttcctaggctgtcattgtaaataacaatttgttcttaactgagtaaaataaaaataacagaaATAACTTTTATTTTGATGAGGGAAGCAGAGAGGAAGTGGATCTATAACGTTTGGGAAGTCTGTTTAAAAATACGTTCCTTTAGATATTTTGTCTCTAATTACCCTCGTCATAATTACCAACCGTCCTGCCCACTGGCACAATAAGTTGAAATTGAATGTTATTTAACTTCTGGCTTCCCGCTGACTGTTTTTGTGCAGCCATATACAATGGGAGCAACGCTAGTATATgCAAATGAAAACGCGACCTGGCGAGGTCTTGATAGACTGCCTTGATTCCATTGAAGACACCAAAGGAAACAATGGGGATCGAGGGAGGCTCCTGGTAACAAATCTGAGGATCATCTGGCATTCTTTGGCTCTGCCAAGAGTCAATTTGTCTGTTGGATACAATTCCATTATTAACATCACAACAAGGACAGCTAACTCTAAATTGAGAGGCCAGACTGAAGCACTGTATATCTTGACAAAGTCTAACAATACAAGATTTGAGTTCATTTTCACCAATGTGGTTCCAGGGAGTCCGAGACTATTTACATCTGTCATTGCTGTTCACAGGGCTTATGAGACCTCTAAAATGTACCGTGACCTGAAGCTGAGAGGAGCTCTTATTCAAAATAAACAATTGAGGCTTTTGCCTCGAGAGGAAGTGTATGACAAAATCAACGGGGTGTGGAATTTATCCAGTGACCAGGGTAATCTAGGGACCTTTTTCATCACCAATGTTCGGATCGTGTGGCATGCCAATATGAACGAGAGCTTCAACGTCAGCATTCCCTATCTTCAAATTCGTTCCATCAGAATAAGAGACTCAAAGTTTGGCCTAGCTTTGGTGATAGAAAGCTCTCAGCAGACTGGAGGATATGTGCTTGGATTTAAGATCGACCCAATGGATAAGCTTCAAGATGCAGTTAAAGAGATCAACTCGCTGCACAAAGTCTACTCTGCCAACCCCATCTTTGGAGTGGACTATGAGATGGAGGAAAAGCCTCAGCCACTGGAGGAGCTGACAGTGGACCAGCCCCCCGATGATGTGGAAATTGAGCCCGATGAGCAGACTGATGCTTTCACTGCTTACTTTGCTGATGGCAATAAGCAACAAGACCGGGAACCTATGTTTTCTGAGGAGCTGGGAATTGCAGTTGAAAAATTGAAGGAGGGGTTCACACTTCAAGGACTCTGGGAAGTCATGGGCTGAAGCATGAACACTGATAGGCGAGTTAGATTAACCTAGTTCCTGAAATCCTCCCTTTCAAATGGCACAATTGACACTACTGTTTTTTAGAACCATTTGTAAATGTACAATGTATTTTGTCCATTGAAAGGTCTTGATGTATATAATAAAGATGTAGACCTGGTCCGTGTATGAGTGACATGAATTTTAAGAATGAtttctaaataaaaaataattctaTACAACA
>XM_036958836.1
TATGCAGCAGAGTGCAAAGCAAAGGGGGACCTAGCCGTAGCCGTTTGATAGCTGGCTAGATTTCTGCTTTTCAACGCTGTTGTATTTACATACACTAGCGTGTATTCCTATTTTATTGGCCTGCACAAAAATAGTCCACGGGAAGCCTGAAGTTAAATGAAATGTACATTTACTGTGCCGGTGGGCAGGACAGTTAGTTATGATGACGGGGGGATTTGAGACAAAATATCTCAAGGAAATTGTTATCATATAGGAAGAGGCGAAGCAACAGTTTTTACTCGGCCCAAAATCTGTCCATGAAAAATAAGCCCACGAAGCGAGGAATTTGTGTATGGGAGGTCATTGAGAGactgtcgaatttggtcaacaaaaaatgtaattgcaaaTTTGCTacatgaggcttatttgatcatTTATACCTTCATAATGGTTACGTTGTTAGGAATGGACTGATATAAGTGGGTGCACGTGCCATTTCGGCAAAAAAACACTAAATTATTTTAtattggagttgtgcctgttAGAATGTTGGAAGATAGAGGACTCCTCGTGGATATAACccgttttagcatggacattgctattgagggcttccaccattttaaaataatgaactgggtggggattcctgaGTTGGAAGCAATCAGCCAATGAGGAAGAAGAAAATggagatacaaagatgagtcctcttaTCAATATTTatggcctgttgttcacacgTGTATCTGCTCTCTCATTGACTtcaatggtcccacctgatctcgcctctTCCTGCCTGGCTTCCATCATTGAGGACAtgcatttccattgttagagcagtCATGCTAATATCTTAATATAATAGAGGATCTTTAGTATTATTAAACATACTCCCCAAATGTGTTGTAGACCCACTCCCTCTCTGCTTACCTcatgtcaaaataaaagtcccccacAAATGATTCCTTTTTTTGTCCACATAATGCACATGGGGCGATAggtttgctagatcgaatccctgagccgacaaggCAAATGAAAACGCGACCTGGCGAGGTCTTGATAGACTGCCTTGATTCCATTGAAGACACCAAAGGAAACAATGGGGATCGAGGGAGGCTCCTGGTAACAAATCTGAGGATCATCTGGCATTCTTTGGCTCTGCCAAGAGTCAATTTGTCTGTTGGATACAATTCCATTATTAACATCACAACAAGGACAGCTAACTCTAAATTGAGAGGCCAGACTGAAGCACTGTATATCTTGACAAAGTCTAACAATACAAGATTTGAGTTCATTTTCACCAATGTGGTTCCAGGGAGTCCGAGACTATTTACATCTGTCATTGCTGTTCACAGGGCTTATGAGACCTCTAAAATGTACCGTGACCTGAAGCTGAGAGGAGCTCTTATTCAAAATAAACAATTGAGGCTTTTGCCTCGAGAGGAAGTGTATGACAAAATCAACGGGGTGTGGAATTTATCCAGTGACCAGGGTAATCTAGGGACCTTTTTCATCACCAATGTTCGGATCGTGTGGCATGCCAATATGAACGAGAGCTTCAACGTCAGCATTCCCTATCTTCAAATTCGTTCCATCAGAATAAGAGACTCAAAGTTTGGCCTAGCTTTGGTGATAGAAAGCTCTCAGCAGACTGGAGGATATGTGCTTGGATTTAAGATCGACCCAATGGATAAGCTTCAAGATGCAGTTAAAGAGATCAACTCGCTGCACAAAGTCTACTCTGCCAACCCCATCTTTGGAGTGGACTATGAGATGGAGGAAAAGCCTCAGCCACTGGAGGAGCTGACAGTGGACCAGCCCCCCGATGATGTGGAAATTGAGCCCGATGAGCAGACTGATGCTTTCACTGCTTACTTTGCTGATGGCAATAAGCAACAAGACCGGGAACCTATGTTTTCTGAGGAGCTGGGAATTGCAGTTGAAAAATTGAAGGAGGGGTTCACACTTCAAGGACTCTGGGAAGTCATGGGCTGAAGCATGAACACTGATAGGCGAGTTAGATTAACCTAGTTCCTGAAATCCTCCCTTTCAAATGGCACAATTGACACTACTGTTTTTTAGAACCATTTGTAAATGTACAATGTATTTTGTCCATTGAAAGGTCTTGATGTATATAATAAAGATGTAGACCTGGTCCGTGTATGAGTGACATGAATTTTAAGAATGAtttctaaataaaaaataattctaTACAACA
>XM_021579071.2
AGGGCAACAGGGAATGGGAACGCGTAATCGTTGGCTGGCCATCTTGCCTGGAGAAGATTAgCAAATGAAAACGCGACCTGGCGAGGTCTTGATAGACTGCCTTGATTCCATTGAAGACACCAAAGGAAACAATGGGGATCGAGGGAGGCTCCTGGTAACAAATCTGAGGATCATCTGGCATTCTTTGGCTCTGCCAAGAGTCAATTTGTCTGTTGGATACAATTCCATTATTAACATCACAACAAGGACAGCTAACTCTAAATTGAGAGGCCAGACTGAAGCACTGTATATCTTGACAAAGTCTAACAATACAAGATTTGAGTTCATTTTCACCAATGTGGTTCCAGGGAGTCCGAGACTATTTACATCTGTCATTGCTGTTCACAGGGCTTATGAGACCTCTAAAATGTACCGTGACCTGAAGCTGAGAGGAGCTCTTATTCAAAATAAACAATTGAGGCTTTTGCCTCGAGAGGAAGTGTATGACAAAATCAACGGGGTGTGGAATTTATCCAGTGACCAGGGTAATCTAGGGACCTTTTTCATCACCAATGTTCGGATCGTGTGGCATGCCAATATGAACGAGAGCTTCAACGTCAGCATTCCCTATCTTCAAATTCGTTCCATCAGAATAAGAGACTCAAAGTTTGGCCTAGCTTTGGTGATAGAAAGCTCTCAGCAGACTGGAGGATATGTGCTTGGATTTAAGATCGACCCAATGGATAAGCTTCAAGATGCAGTTAAAGAGATCAACTCGCTGCACAAAGTCTACTCTGCCAACCCCATCTTTGGAGTGGACTATGAGATGGAGGAAAAGCCTCAGCCACTGGAGGAGCTGACAGTGGACCAGCCCCCCGATGATGTGGAAATTGAGCCCGATGAGCAGACTGATGCTTTCACTGCTTACTTTGCTGATGGCAATAAGCAACAAGACCGGGAACCTATGTTTTCTGAGGAGCTGGGAATTGCAGTTGAAAAATTGAAGGAGGGGTTCACACTTCAAGGACTCTGGGAAGTCATGGGCTGAAGCATGAACACTGATAGGCGAGTTAGATTAACCTAGTTCCTGAAATCCTCCCTTTCAAATGGCACAATTGACACTACTGTTTTTTAGAACCATTTGTAAATGTACAATGTATTTTGTCCATTGAAAGGTCTTGATGTATATAATAAAGATGTAGACCTGGTCCGTGTATGAGTGACATGAATTTTAAGAATGAtttctaaataaaaaataattctaTACAACA
>XM_021579069.2
AGTAATGTTGCCAGGGCAACAGGGAATGGGAACGCGTAATCGTTGGCTGGCCATCTTGCCTGGAGAAGATTAGTAATAATGATTTAAATACATTAGCTACCTGTTGTTCTAATATCATGGCGTCTATGTTGGATGTTCTCTGGGAGGATAGAGATGTTAGATTCGATATAACCGCACAgCAAATGAAAACGCGACCTGGCGAGGTCTTGATAGACTGCCTTGATTCCATTGAAGACACCAAAGGAAACAATGGGGATCGAGGGAGGCTCCTGGTAACAAATCTGAGGATCATCTGGCATTCTTTGGCTCTGCCAAGAGTCAATTTGTCTGTTGGATACAATTCCATTATTAACATCACAACAAGGACAGCTAACTCTAAATTGAGAGGCCAGACTGAAGCACTGTATATCTTGACAAAGTCTAACAATACAAGATTTGAGTTCATTTTCACCAATGTGGTTCCAGGGAGTCCGAGACTATTTACATCTGTCATTGCTGTTCACAGGGCTTATGAGACCTCTAAAATGTACCGTGACCTGAAGCTGAGAGGAGCTCTTATTCAAAATAAACAATTGAGGCTTTTGCCTCGAGAGGAAGTGTATGACAAAATCAACGGGGTGTGGAATTTATCCAGTGACCAGGGTAATCTAGGGACCTTTTTCATCACCAATGTTCGGATCGTGTGGCATGCCAATATGAACGAGAGCTTCAACGTCAGCATTCCCTATCTTCAAATTCGTTCCATCAGAATAAGAGACTCAAAGTTTGGCCTAGCTTTGGTGATAGAAAGCTCTCAGCAGACTGGAGGATATGTGCTTGGATTTAAGATCGACCCAATGGATAAGCTTCAAGATGCAGTTAAAGAGATCAACTCGCTGCACAAAGTCTACTCTGCCAACCCCATCTTTGGAGTGGACTATGAGATGGAGGAAAAGCCTCAGCCACTGGAGGAGCTGACAGTGGACCAGCCCCCCGATGATGTGGAAATTGAGCCCGATGAGCAGACTGATGCTTTCACTGCTTACTTTGCTGATGGCAATAAGCAACAAGACCGGGAACCTATGTTTTCTGAGGAGCTGGGAATTGCAGTTGAAAAATTGAAGGAGGGGTTCACACTTCAAGGACTCTGGGAAGTCATGGGCTGAAGCATGAACACTGATAGGCGAGTTAGATTAACCTAGTTCCTGAAATCCTCCCTTTCAAATGGCACAATTGACACTACTGTTTTTTAGAACCATTTGTAAATGTACAATGTATTTTGTCCATTGAAAGGTCTTGATGTATATAATAAAGATGTAGACCTGGTCCGTGTATGAGTGACATGAATTTTAAGAATGAtttctaaataaaaaataattctaTACAACA
>XM_021579070.2
GTAGTAATGTTGCCAGGGCAACAGGGAATGGGAACGCGTAATCGTTGGCTGGCCATCTTGCCTGGAGAAGATTAGTAATAATGATTTAAATACATTAGCTACCTGTTGTTCTAATATCATGGCGTCTATGTTGGATGTTCTCTGGGAGGATAGAGATGTTAGATTCGATATAACCGCACAgCAAATGAAAACGCGACCTGGCGAGGTCTTGATAGACTGCCTTGATTCCATTGAAGACACCAAAGGAAACAATGGGGATCGAGGGAGGCTCCTGGTAACAAATCTGAGGATCATCTGGCATTCTTTGGCTCTGCCAAGAGTCAATTTGTCTGTTGGATACAATTCCATTATTAACATCACAACAAGGACAGCTAACTCTAAATTGAGAGGCCAGACTGAAGCACTGTATATCTTGACAAAGTCTAACAATACAAGATTTGAGTTCATTTTCACCAATGTGGTTCCAGGGAGTCCGAGACTATTTACATCTGTCATTGCTGTTCACAGGGCTTATGAGACCTCTAAAATGTACCGTGACCTGAAGCTGAGAGGAGCTCTTATTCAAAATAAACAATTGAGGCTTTTGCCTCGAGAGGAAGTGTATGACAAAATCAACGGGGTGTGGAATTTATCCAGTGACCAGGGTAATCTAGGGACCTTTTTCATCACCAATGTTCGGATCGTGTGGCATGCCAATATGAACGAGAGCTTCAACGTCAGCATTCCCTATCTTCAAATTAGTTCCATCAGAGTAAGAGACTCAAAGTTTGGTCTGGCTTTGGTGATAGAAAGCTTTCATCAGACTGGAGGATATGTGCTTGGATTTAAGATCGACCCAATGGATAAGCTTCAAGATGCAGTTAAAGAGATCAACTCGCTGCACAAAGTCTACTCTGCCAACCCCATCTTTGGAGTGGACTATGAGATGGAGGAAAAGCCTCAGCCACTGGAGGAGCTGACAGTGGACCAGCCCCCCGATGATGTGGAAATTGAGCCCGATGAGCAGACTGATGCTTTCACTGCTTACTTTGCTGATGGCAATAAGCAACAAGACCGGGAACCTATGTTTTCTGAGGAGCTGGGAATTGCAGTTGAAAAATTGAAGGAGGGGTTCACACTTCAAGGACTCTGGGAAGTCATGGGCTGAAGCATGAACACTGATAGGCGAGTTAGATTAACCTAGTTCCTGAAATCCTCCCTTTCAAATGGCACAATTGACACTACTGTTTTTTAGAACCATTTGTAAATGTACAATGTATTTTGTCCATTGAAAGGTCTTGATGTATATAATAAAGATGTAGACCTGGTCCGTGTATGAGTGACATGAATTTTAAGAATGAtttctaaataaaaaataattctaTACAACA

Function

symbol description
bbs5 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ morphogenesis; and establishment of pigment granule localization. Predicted to be located in ciliary membrane; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in ciliary basal body. Is expressed in forebrain; margin; retina; and tail bud. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 5. Orthologous to human BBS5 (Bardet-Biedl syndrome 5).

NR:

description
Bardet-Biedl syndrome 5 protein isoform X2

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0001947 heart looping biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16748 BBS5; Bardet-Biedl syndrome 5 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958835.1 False 1483 mRNA 0.41 11 15424718 15432603
XM_036958836.1 False 2200 mRNA 0.42 11 15424718 15433656
XM_021579071.2 False 1250 mRNA 0.43 11 15424718 15433868
XM_021579069.2 False 1368 mRNA 0.43 11 15424718 15433880
XM_021579070.2 True 1370 mRNA 0.42 11 15424718 15433882

Neighbor

gene id symbol gene type direction distance location
klhl41a LOC106586209 coding downstream 916 15414900 ~ 15423802 (-)
LOC110501472 ppig coding downstream 23012 15394975 ~ 15401706 (-)
phgdh LOC106581777 coding downstream 45574 15365708 ~ 15379144 (-)
klhl23 klhl23 coding downstream 59150 15361643 ~ 15365568 (-)
LOC110501467 lab coding downstream 64391 15356850 ~ 15360327 (-)
col28a2a LOC106581781 coding upstream 12170 15446052 ~ 15480514 (-)
zgc:172182 LOC106581782 coding upstream 63290 15497172 ~ 15501749 (-)
rdh1 LOC106581784 coding upstream 143189 15577071 ~ 15580959 (-)
dhrs9 LOC106581786 coding upstream 147437 15581319 ~ 15586397 (-)
nostrin nostrin coding upstream 180530 15614412 ~ 15618681 (-)
G1781027 NA non-coding downstream 36748 15387764 ~ 15387970 (-)
G1781025 NA non-coding downstream 38267 15385933 ~ 15386451 (-)
G1781021 NA non-coding downstream 45033 15379432 ~ 15379685 (-)
G1780923 NA non-coding downstream 154589 15269756 ~ 15270129 (-)
G1780969 NA non-coding downstream 155128 15267522 ~ 15269590 (-)
G1781106 lrp2 non-coding upstream 100151 15534033 ~ 15538622 (-)
G1781137 lrp2 non-coding upstream 134047 15567503 ~ 15568534 (-)
G1781192 NA non-coding upstream 238341 15672223 ~ 15678026 (-)
G1781203 NA non-coding upstream 255907 15689789 ~ 15690167 (-)
G1781260 NA non-coding upstream 351139 15785021 ~ 15796656 (-)
G1778224 NA other downstream 2094223 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 2251739 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 2800024 12620582 ~ 12624860 (-)
G1777441 LOC106581914 other downstream 3154604 12268217 ~ 12270114 (-)
G1777286 NA other downstream 3383096 12041108 ~ 12041622 (-)
b3galt1b LOC106581793 other upstream 251974 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 1623240 17057104 ~ 17063550 (-)
G1783895 LOC106581829 other upstream 2435647 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 3741685 19175567 ~ 19179266 (-)

Expression


Co-expression Network